Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G14
(653 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91645|CAC1A_DROME Voltage-dependent calcium channel typ... 35 0.22
sp|P59531|T2R12_HUMAN Putative Taste receptor type 2 member... 32 1.9
sp|Q86VH4|LRTM4_HUMAN Leucine-rich repeat transmembrane neu... 31 2.5
sp|Q8K995|CYOC_BUCAP Cytochrome o ubiquinol oxidase subunit... 31 3.2
sp|Q9Y5Y9|SC10A_HUMAN Sodium channel protein type X alpha s... 30 4.2
sp|O46669|SC10A_CANFA Sodium channel protein type X alpha s... 30 4.2
sp|Q80XG9|LRTM4_MOUSE Leucine-rich repeat transmembrane neu... 30 4.2
sp|P10767|FGF6_HUMAN Fibroblast growth factor 6 precursor (... 30 5.5
sp|Q37050|CEMA_CHLRE Chloroplast envelope membrane protein 30 5.5
sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5... 30 5.5
>sp|P91645|CAC1A_DROME Voltage-dependent calcium channel type A alpha-1 subunit (Cacophony
protein) (Nightblind A protein) (No-on-transient B
protein) (Dmca1A)
Length = 1851
Score = 34.7 bits (78), Expect = 0.22
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Frame = +1
Query: 241 KSLTLLWFSIYQLIKKDLNGNYNHSELTKFSFFILYNIEAILQTVLMTSLIILILERKPQ 420
K+ WF I + + H F LY E I + M+ + I + P+
Sbjct: 439 KTQWFYWFVIVLVFLNTVCVAVEHYGQPSFLTEFLYYAEFIFLGLFMSEMFIKMYALGPR 498
Query: 421 RFFEKSWNYTFCSPIMLSLFEI-----------YSIVHCVRNLHIRK--GIFFEINILLI 561
+FE S+N C I S+FE+ S++ +R L I K + + L+I
Sbjct: 499 IYFESSFNRFDCVVISGSIFEVIWSEVKGGSFGLSVLRALRLLRIFKVTKYWSSLRNLVI 558
Query: 562 TSYSSTQPFVILYHSICLTILLSTIKSM 645
+ +S + + L + L IL+ + M
Sbjct: 559 SLLNSMRSIISLLFLLFLFILIFALLGM 586
>sp|P59531|T2R12_HUMAN Putative Taste receptor type 2 member 12 (T2R12) (Taste receptor
type 2 member 26) (T2R26)
Length = 264
Score = 31.6 bits (70), Expect = 1.9
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 139 IWFREICQWRKTEITNHYNLKSIYVYLGTFANITKSLTLLWFSIYQLIKKDLNGNYNHSE 318
IW R WR + L S+ + A +T L+ LW +IY + +++ + + S+
Sbjct: 119 IWLR----WRISRTLLELPLGSLLLLFFNLA-LTGGLSDLWINIYTMYERNSTWSLDVSK 173
Query: 319 LTKFSFFILYNIEAILQTVL-MTSLIILIL 405
+ S +IL ++ ++ +L + SL++LIL
Sbjct: 174 ILYCSLWILVSLIYLISFLLSLISLLLLIL 203
>sp|Q86VH4|LRTM4_HUMAN Leucine-rich repeat transmembrane neuronal protein 4 precursor
Length = 518
Score = 31.2 bits (69), Expect = 2.5
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 190 YNLKSIYVYLGTFANITKSLTLLWFSIYQLIKKDLNGN 303
+NL+SIY+ +I++ LT W S++ L DL+GN
Sbjct: 229 FNLRSIYLQWNRIRSISQGLTWTWSSLHNL---DLSGN 263
>sp|Q8K995|CYOC_BUCAP Cytochrome o ubiquinol oxidase subunit III
Length = 189
Score = 30.8 bits (68), Expect = 3.2
Identities = 28/128 (21%), Positives = 50/128 (39%)
Frame = +1
Query: 172 TEITNHYNLKSIYVYLGTFANITKSLTLLWFSIYQLIKKDLNGNYNHSELTKFSFFILYN 351
T + NH YV+L T + SL+ +I + N N+ ++ F + +
Sbjct: 41 TNLINHKIFNLSYVFLETLILLLSSLSSGMLTIQK--------NKNNIKIIYFYLLLTFF 92
Query: 352 IEAILQTVLMTSLIILILERKPQRFFEKSWNYTFCSPIMLSLFEIYSIVHCVRNLHIRKG 531
+ + + LILE CSP + F I+ + V +H+ G
Sbjct: 93 LGLSFLLMEVNEFYKLILEN--------------CSPSQHAFFSIFFTIVGVHGIHVFFG 138
Query: 532 IFFEINIL 555
+ F ++IL
Sbjct: 139 LIFILSIL 146
>sp|Q9Y5Y9|SC10A_HUMAN Sodium channel protein type X alpha subunit (Voltage-gated sodium
channel alpha subunit Nav1.8) (Peripheral nerve sodium
channel 3) (hPN3)
Length = 1956
Score = 30.4 bits (67), Expect = 4.2
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +1
Query: 196 LKSIYVYLGT--FANITKSLTLLWFSIYQLIKKDLNGNYNHSELTKFSFFILYNIEAILQ 369
LK+I L T FA +T +L ++ +I+ ++ H ++ +F + I I+
Sbjct: 654 LKTILFGLVTDPFAELTITLCIVVNTIFMAME--------HHGMSP-TFEAMLQIGNIVF 704
Query: 370 TVLMTS-LIILILERKPQRFFEKSWNYTFCSPIMLSLFEI 486
T+ T+ ++ I+ P +F+K WN C + +SL E+
Sbjct: 705 TIFFTAEMVFKIIAFDPYYYFQKKWNIFDCIIVTVSLLEL 744
>sp|O46669|SC10A_CANFA Sodium channel protein type X alpha subunit (Voltage-gated sodium
channel alpha subunit Nav1.8) (NaNG)
Length = 1962
Score = 30.4 bits (67), Expect = 4.2
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 226 FANITKSLTLLWFSIYQLIKKDLNGNYNHSELTKFSFFILYNIEAILQTVLMTS-LIILI 402
FA +T +L ++ +++ ++ H ++ +F + I I+ TV T+ ++ I
Sbjct: 675 FAELTTTLCIVVNTVFMAME--------HHGMSS-AFEAMLQIGNIVFTVFFTAEMVFKI 725
Query: 403 LERKPQRFFEKSWNYTFCSPIMLSLFEI 486
+ P +F+K WN C + +SL E+
Sbjct: 726 IAFDPYYYFQKRWNIFDCIIVTVSLIEL 753
>sp|Q80XG9|LRTM4_MOUSE Leucine-rich repeat transmembrane neuronal protein 4 precursor
Length = 590
Score = 30.4 bits (67), Expect = 4.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 190 YNLKSIYVYLGTFANITKSLTLLWFSIYQLIKKDLNGN 303
+NL+SIY+ ++++ LT W S++ L DL+GN
Sbjct: 229 FNLRSIYLQWNRIRSVSQGLTWTWSSLHTL---DLSGN 263
>sp|P10767|FGF6_HUMAN Fibroblast growth factor 6 precursor (FGF-6) (HBGF-6) (HST-2)
Length = 208
Score = 30.0 bits (66), Expect = 5.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 145 FREICQWRKTEITNHYNLKSIYVYLGTFANITK 243
F+E C++R+T + N+YN +Y GT+ ++K
Sbjct: 153 FQEECKFRETLLPNNYNAYESDLYQGTYIALSK 185
>sp|Q37050|CEMA_CHLRE Chloroplast envelope membrane protein
Length = 500
Score = 30.0 bits (66), Expect = 5.5
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 151 EICQWRKTEITNHYNLKSIYVYLGTFANITKSLTLLWFSIYQLIKKDLNGNYNHSELTKF 330
+I Q + E+ +YN SI FA++ TLL Y LI ++ N S L +
Sbjct: 357 KIYQEKTIELATYYNNHSIEAITNFFADLLSLFTLL----YLLITLEIQINITKSFLLEV 412
Query: 331 SFFILYNIEAILQTVLMTSLII 396
FF L + + L +L+T L++
Sbjct: 413 -FFGLDDSKKSLLILLITDLLV 433
>sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 554
Score = 30.0 bits (66), Expect = 5.5
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 463 IMLSLFEIYSIVHCVRNLHIRKGIFFEINILLITSYSSTQPFVILYHSICLTILLSTIKS 642
I+L F ++ + L++ K FFE NI S +I Y S+ L+S I S
Sbjct: 9 ILLFEFSFLMMLMSLYLLYLNKEFFFEWNIYTFNSMKFNFLLLIDYKSLMFIFLVSMIFS 68
Query: 643 MIM 651
MI+
Sbjct: 69 MII 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,886,592
Number of Sequences: 369166
Number of extensions: 1139298
Number of successful extensions: 2142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)