Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G13
(400 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 103 2e-22
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 103 2e-22
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 103 2e-22
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 100 8e-22
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 99 2e-21
sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein 98 5e-21
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 97 9e-21
sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein 97 1e-20
sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein 96 2e-20
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 96 3e-20
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 103 bits (256), Expect = 2e-22
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+T
Sbjct: 549 MKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIIT 608
Query: 186 KMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 103 bits (256), Expect = 2e-22
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+T
Sbjct: 549 MKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIIT 608
Query: 186 KMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 103 bits (256), Expect = 2e-22
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+T
Sbjct: 549 MKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIIT 608
Query: 186 KMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 100 bits (250), Expect = 8e-22
Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MK+TVEDEKLK KIS+ D++ I+DKC E IGWLDKNQ A ++EF++ KELEKVCNPI+T
Sbjct: 549 MKSTVEDEKLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIIT 608
Query: 186 KMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQSAGGMPGGMPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 99.4 bits (246), Expect = 2e-21
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MK+TVEDEKL+ KIS+ D+ I++KC E IGWLDKNQ A K+E+++H KELEKVCNPI+T
Sbjct: 549 MKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIIT 608
Query: 186 KMYQ-----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQGAGGMPGGMPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein
Length = 649
Score = 98.2 bits (243), Expect = 5e-21
Identities = 50/101 (49%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MK+TVEDEKLK KIS+ D+ I+DKC E I WLDKNQ A KDE+++ K+LEKVCNPI+T
Sbjct: 549 MKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIIT 608
Query: 186 KMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQSDGGMPGGMPDGMPGGFQELGAAPGGGSSGPTIEEVD 649
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 97.4 bits (241), Expect = 9e-21
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+T
Sbjct: 549 MKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIIT 608
Query: 186 KMYQ----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 609 KLYQSAGGMPGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 650
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein
Length = 644
Score = 97.1 bits (240), Expect = 1e-20
Identities = 50/98 (51%), Positives = 59/98 (60%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MK T+EDEKLKDKISE D+K I +KC E + WLD NQ A KDEF++ KELE VCNPI+T
Sbjct: 548 MKQTIEDEKLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELESVCNPIIT 607
Query: 186 KMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 608 KLYQSAGGMPGGMPGGMPGGAPGAGSTG-GGPTIEEVD 644
>sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein
Length = 654
Score = 96.3 bits (238), Expect = 2e-20
Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
MK TVEDEK+K KISE D+K I+ KC E + W+DKNQ A KD++++ KELEKVCNPI+T
Sbjct: 556 MKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVCNPIIT 615
Query: 186 KMYQXXXXXXXXXXXXXXXXXXXXXXXXKQ-GPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 616 KLYQAGGGMPGGMPGGMPGGMPGSGSKASSGGPTIEEVD 654
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 95.9 bits (237), Expect = 3e-20
Identities = 48/98 (48%), Positives = 61/98 (62%)
Frame = +3
Query: 6 MKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMT 185
+K TVEDEKL+ KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++
Sbjct: 552 IKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIIS 611
Query: 186 KMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 299
K+YQ GPT+EEVD
Sbjct: 612 KLYQ----------GGPGGGSGGGGSGASGGPTIEEVD 639
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,613,475
Number of Sequences: 369166
Number of extensions: 355569
Number of successful extensions: 1307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)