Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G04
(269 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 75 6e-14
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 73 2e-13
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 72 3e-13
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 72 3e-13
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 72 4e-13
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 72 4e-13
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 72 5e-13
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 72 5e-13
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 71 9e-13
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 71 9e-13
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 74.7 bits (182), Expect = 6e-14
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+++GPTCDG D + ++ LP++ VG+W+++ NMGAYTIAASS FNG + VHY M
Sbjct: 348 YTSSLWGPTCDGLDQIAERVQLPELHVGDWLLFENMGAYTIAASSNFNGFQQSPVHYAM 406
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 72.8 bits (177), Expect = 2e-13
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 351 YSSSIWGPTCDGLDRIVERCSLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 72.4 bits (176), Expect = 3e-13
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 351 YSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 72.4 bits (176), Expect = 3e-13
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 351 YSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 72.0 bits (175), Expect = 4e-13
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 351 YSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 72.0 bits (175), Expect = 4e-13
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 345 YSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPSIYYVM 403
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 71.6 bits (174), Expect = 5e-13
Identities = 28/56 (50%), Positives = 43/56 (76%)
Frame = +2
Query: 17 TIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+I+GPTCDG D ++++ +P++ VG+WI++ NMGAYT+AA+S FNG +HY M
Sbjct: 344 SIWGPTCDGLDRIVERCNMPELQVGDWILFENMGAYTVAAASTFNGFQRPTIHYVM 399
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 71.6 bits (174), Expect = 5e-13
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 351 YSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 70.9 bits (172), Expect = 9e-13
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 2 ETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYF 181
E F+STI+GPTCD D + ++ +PKM+VG W+ +P+MGAYT+AA++ FNG Y
Sbjct: 348 EKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGFSKPVPMYV 407
Query: 182 MYQD 193
M ++
Sbjct: 408 MSEE 411
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 70.9 bits (172), Expect = 9e-13
Identities = 28/59 (47%), Positives = 45/59 (76%)
Frame = +2
Query: 8 FVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 184
+ S+I+GPTCDG D ++++ LP++ VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 352 YSSSIWGPTCDGLDRIVERFELPELQVGDWMLFENMGAYTVAAASTFNGFQRPTLYYVM 410
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,364,013
Number of Sequences: 369166
Number of extensions: 689708
Number of successful extensions: 1392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)