Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G03
(385 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 112 3e-25
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 108 3e-24
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 108 3e-24
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 108 3e-24
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 90 2e-18
sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subuni... 77 9e-15
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 76 2e-14
sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATP... 72 3e-13
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 66 2e-11
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 66 2e-11
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 112 bits (279), Expect = 3e-25
Identities = 52/73 (71%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 FEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 178
FEG G DK+LEDKFFEHEV +NV++F+QQF+F VFYS +KLKEQE RNIVWI+ECV+
Sbjct: 275 FEGAGNNVGDKTLEDKFFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVA 334
Query: 179 QRHRAKIDSYINI 217
Q+HRAKID+YI I
Sbjct: 335 QKHRAKIDNYIPI 347
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 108 bits (271), Expect = 3e-24
Identities = 50/73 (68%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 FEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 178
FEG G+ DK+LED+FFEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC++
Sbjct: 278 FEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIA 337
Query: 179 QRHRAKIDSYINI 217
QRHRAKID+YI I
Sbjct: 338 QRHRAKIDNYIPI 350
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 108 bits (271), Expect = 3e-24
Identities = 50/73 (68%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 FEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 178
FEG G+ DK+LED+FFEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC++
Sbjct: 278 FEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIA 337
Query: 179 QRHRAKIDSYINI 217
QRHRAKID+YI I
Sbjct: 338 QRHRAKIDNYIPI 350
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 108 bits (271), Expect = 3e-24
Identities = 51/73 (69%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 FEGVGTG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVS 178
F+G G DK+LEDKFFEHEVK++V +F+QQF+F VFY+ +KLKEQE RNIVWIAECV+
Sbjct: 277 FDGSGNNPGDKTLEDKFFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVA 336
Query: 179 QRHRAKIDSYINI 217
Q+HRAKID+YI I
Sbjct: 337 QKHRAKIDNYIPI 349
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 89.7 bits (221), Expect = 2e-18
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = +2
Query: 14 GTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRA 193
G N+KSLED FFEHEV +N +F Q+ + VFY+ IKL+EQE+RNIVWIAEC+SQ +
Sbjct: 288 GVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQ 347
Query: 194 KIDSYINI 217
K++ YI I
Sbjct: 348 KMNQYIPI 355
>sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa
subunit 2)
Length = 350
Score = 77.4 bits (189), Expect = 9e-15
Identities = 33/62 (53%), Positives = 49/62 (79%)
Frame = +2
Query: 32 SLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKIDSYI 211
+LED+F E K NV +F+QQ++F +FYS IKLK+ E+RNIVWI+EC++QR +I+++I
Sbjct: 286 TLEDRFLMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRINAFI 345
Query: 212 NI 217
I
Sbjct: 346 PI 347
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 76.3 bits (186), Expect = 2e-14
Identities = 31/70 (44%), Positives = 53/70 (75%)
Frame = +2
Query: 8 GVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRH 187
G G KSLED F++ E++++ +F +QF +A+ Y+ +KL+EQE+RNI WIAEC++Q
Sbjct: 294 GGGGTEGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQ 353
Query: 188 RAKIDSYINI 217
+ +I++YI++
Sbjct: 354 KERINNYISV 363
>sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 343
Score = 72.4 bits (176), Expect = 3e-13
Identities = 31/66 (46%), Positives = 49/66 (74%)
Frame = +2
Query: 23 NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAKID 202
+ KSL+D F E EV++N +F+QQF++ + Y+ +KL+EQE+RN+ WIAEC+SQ R +
Sbjct: 278 SQKSLDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDRAL 337
Query: 203 SYINIL 220
+ + IL
Sbjct: 338 NIVPIL 343
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 66.2 bits (160), Expect = 2e-11
Identities = 27/66 (40%), Positives = 48/66 (72%)
Frame = +2
Query: 2 FEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQ 181
F + G + L+ F+E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+Q
Sbjct: 278 FSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQ 337
Query: 182 RHRAKI 199
+++I
Sbjct: 338 NQKSRI 343
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 66.2 bits (160), Expect = 2e-11
Identities = 27/66 (40%), Positives = 48/66 (72%)
Frame = +2
Query: 2 FEGVGTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQ 181
F + G + L+ F+E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+Q
Sbjct: 278 FSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQ 337
Query: 182 RHRAKI 199
+++I
Sbjct: 338 NQKSRI 343
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,300,467
Number of Sequences: 369166
Number of extensions: 698419
Number of successful extensions: 1415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)