Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G01
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7ZX42|CDK9B_XENLA Cell division protein kinase 9-B (Cyc... 61 7e-10
sp|Q641Z4|CDK9_RAT Cell division protein kinase 9 (Cyclin-d... 59 3e-09
sp|Q5EAB2|CDK9_BOVIN Cell division protein kinase 9 (Cyclin... 58 6e-09
sp|P50750|CDK9_HUMAN Cell division protein kinase 9 (Cyclin... 56 2e-08
sp|O35495|PFTK1_MOUSE Serine/threonine-protein kinase PFTAI... 40 0.001
sp|O94921|PFTK1_HUMAN Serine/threonine-protein kinase PFTAI... 40 0.002
sp|Q04899|PCTK3_MOUSE Serine/threonine-protein kinase PCTAI... 35 0.054
sp|O35832|PCTK3_RAT Serine/threonine-protein kinase PCTAIRE... 35 0.054
sp|Q15131|CDK10_HUMAN Cell division protein kinase 10 (Seri... 34 0.092
sp|P23111|CDC2_MAIZE Cell division control protein 2 homolo... 34 0.092
>sp|Q7ZX42|CDK9B_XENLA Cell division protein kinase 9-B (Cyclin-dependent kinase 9-B)
Length = 376
Score = 61.2 bits (147), Expect = 7e-10
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Frame = +1
Query: 4 HQLKLIVNLCGSINEESWPGVSKLESFKRLE-KTNHKRFVRQQLLKVIDCHSAVXXXXXX 180
HQL LI LCGSI E WP V K E +++LE KR V+++L + A+
Sbjct: 240 HQLTLISQLCGSITPEVWPNVDKYELYQKLELPKGQKRKVKERLKAYVKDVCALDLIDKL 299
Query: 181 XXXXXXXXXTADAALMHEFFYEDPPAGDLSDF--SNAGSFYEFLSNQKK-----PNQP 333
+D AL H+FF+ DP DL + ++ S +E+L+ ++ P QP
Sbjct: 300 LILDPAQRTDSDEALNHDFFWSDPMPSDLKNMLSTHNQSMFEYLAPPRRRGGHMPQQP 357
>sp|Q641Z4|CDK9_RAT Cell division protein kinase 9 (Cyclin-dependent kinase 9)
sp|Q99J95|CDK9_MOUSE Cell division protein kinase 9 (Cyclin-dependent kinase 9)
Length = 372
Score = 59.3 bits (142), Expect = 3e-09
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = +1
Query: 4 HQLKLIVNLCGSINEESWPGVSKLESFKRLEKT-NHKRFVRQQLLKVIDCHSAVXXXXXX 180
HQL LI LCGSI E WP V K E F++LE KR V+ +L + A+
Sbjct: 236 HQLALISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKL 295
Query: 181 XXXXXXXXXTADAALMHEFFYEDPPAGDLSDF--SNAGSFYEFLSNQKK 321
+D AL H+FF+ DP DL ++ S +E+L+ ++
Sbjct: 296 LVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRR 344
>sp|Q5EAB2|CDK9_BOVIN Cell division protein kinase 9 (Cyclin-dependent kinase 9)
Length = 372
Score = 58.2 bits (139), Expect = 6e-09
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = +1
Query: 4 HQLKLIVNLCGSINEESWPGVSKLESFKRLEKT-NHKRFVRQQLLKVIDCHSAVXXXXXX 180
HQL LI LCGSI E WP V K E F+++E KR V+ +L + A+
Sbjct: 236 HQLALISQLCGSITPEVWPNVDKYELFEKVELVKGQKRKVKDRLKAYVRDPYALDLIDKL 295
Query: 181 XXXXXXXXXTADAALMHEFFYEDPPAGDLSDF--SNAGSFYEFLSNQKK 321
+D AL H+FF+ DP DL ++ S +E+L+ ++
Sbjct: 296 LVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRR 344
>sp|P50750|CDK9_HUMAN Cell division protein kinase 9 (Cyclin-dependent kinase 9)
(Serine/threonine-protein kinase PITALRE) (C-2K) (Cell
division cycle 2-like protein kinase 4)
Length = 372
Score = 56.2 bits (134), Expect = 2e-08
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +1
Query: 4 HQLKLIVNLCGSINEESWPGVSKLESFKRLEKT-NHKRFVRQQLLKVIDCHSAVXXXXXX 180
HQL LI LCGSI E WP V E +++LE KR V+ +L + A+
Sbjct: 236 HQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKL 295
Query: 181 XXXXXXXXXTADAALMHEFFYEDPPAGDLSDF--SNAGSFYEFLSNQKK 321
+D AL H+FF+ DP DL ++ S +E+L+ ++
Sbjct: 296 LVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRR 344
>sp|O35495|PFTK1_MOUSE Serine/threonine-protein kinase PFTAIRE-1
Length = 469
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 7 QLKLIVNLCGSINEESWPGVSKLESFKRLEKTNH-KRFVRQQLLKVIDCHSAVXXXXXXX 183
QL+ I + G+ NE++WPGV L FK T + + +RQ K+ + A
Sbjct: 341 QLERIFLVLGTPNEDTWPGVHSLPHFKPERFTVYSSKSLRQAWNKLSYVNHAEDLASKLL 400
Query: 184 XXXXXXXXTADAALMHEFFYEDPP-AGDLSDFSN 282
+A AAL HE+F + PP +L+D S+
Sbjct: 401 QCSPKNRLSAQAALSHEYFSDLPPRLWELTDMSS 434
>sp|O94921|PFTK1_HUMAN Serine/threonine-protein kinase PFTAIRE-1
Length = 469
Score = 40.0 bits (92), Expect = 0.002
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 7 QLKLIVNLCGSINEESWPGVSKLESFKRLEKTNH-KRFVRQQLLKVIDCHSAVXXXXXXX 183
QL+ I + G+ NE++WPGV L FK T + + +RQ K+ + A
Sbjct: 341 QLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNKLSYVNHAEDLASKLL 400
Query: 184 XXXXXXXXTADAALMHEFFYEDPP-AGDLSDFSN 282
+A AAL HE+F + PP +L+D S+
Sbjct: 401 QCSPKNRLSAQAALSHEYFSDLPPRLWELTDMSS 434
>sp|Q04899|PCTK3_MOUSE Serine/threonine-protein kinase PCTAIRE-3 (PCTAIRE-motif protein
kinase 3)
Length = 451
Score = 35.0 bits (79), Expect = 0.054
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 7 QLKLIVNLCGSINEESWPGVSKLESFKRLEKTNHKRFVRQQLL 135
+L LI L G+ EESWPGV+ + F+ N R++ Q LL
Sbjct: 326 ELHLIFRLLGTPTEESWPGVTSISEFRAY---NFPRYLPQPLL 365
>sp|O35832|PCTK3_RAT Serine/threonine-protein kinase PCTAIRE-3 (PCTAIRE-motif protein
kinase 3)
Length = 451
Score = 35.0 bits (79), Expect = 0.054
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 7 QLKLIVNLCGSINEESWPGVSKLESFKRLEKTNHKRFVRQQLL 135
+L LI L G+ EESWPGV+ + F+ N R++ Q LL
Sbjct: 326 ELHLIFRLLGTPTEESWPGVTSISEFRAY---NFPRYLPQPLL 365
>sp|Q15131|CDK10_HUMAN Cell division protein kinase 10 (Serine/threonine-protein kinase
PISSLRE)
Length = 360
Score = 34.3 bits (77), Expect = 0.092
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 1 IHQLKLIVNLCGSINEESWPGVSKL 75
IHQ+ LIV L G+ +E WPG SKL
Sbjct: 245 IHQIDLIVQLLGTPSENIWPGFSKL 269
>sp|P23111|CDC2_MAIZE Cell division control protein 2 homolog (p34cdc2)
Length = 294
Score = 34.3 bits (77), Expect = 0.092
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 IHQLKLIVNLCGSINEESWPGVSKLESFKRLEKTNHKRFVRQQLLKVID--CHSAVXXXX 174
I +L I + G+ NE+SWPGVS L F KT R+ Q L V+ + +
Sbjct: 210 IDELFKIFRILGTPNEQSWPGVSCLPDF----KTAFPRWQAQDLATVVPNLDPAGLDLLS 265
Query: 175 XXXXXXXXXXXTADAALMHEFF 240
TA AL HE+F
Sbjct: 266 KMLRYEPSKRITARQALEHEYF 287
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,117,986
Number of Sequences: 369166
Number of extensions: 709242
Number of successful extensions: 1972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)