Planarian EST Database


Dr_sW_028_F19

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_F19
         (304 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48812|G3P_BRUMA  Glyceraldehyde-3-phosphate dehydrogenas...   142   2e-34
sp|O01360|G3P_ONCVO  Glyceraldehyde 3-phosphate-dehydrogenas...   141   4e-34
sp|P34920|G3PC_CHOCR  Glyceraldehyde-3-phosphate dehydrogena...   139   2e-33
sp|P54270|G3PC_GRAVE  Glyceraldehyde-3-phosphate dehydrogena...   139   2e-33
sp|Q9Y796|G3P_CRYCU  Glyceraldehyde-3-phosphate dehydrogenas...   138   3e-33
sp|P78958|G3P1_SCHPO  Glyceraldehyde-3-phosphate dehydrogena...   135   2e-32
sp|O43026|G3P2_SCHPO  Glyceraldehyde-3-phosphate dehydrogena...   135   2e-32
sp|P00354|G3P1_HUMAN  Glyceraldehyde-3-phosphate dehydrogena...   134   5e-32
sp|P32638|G3P_SCHCO  Glyceraldehyde-3-phosphate dehydrogenas...   134   9e-32
sp|P04406|G3P2_HUMAN  Glyceraldehyde-3-phosphate dehydrogena...   133   1e-31
>sp|P48812|G3P_BRUMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 339

 Score =  142 bits (358), Expect = 2e-34
 Identities = 70/101 (69%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           M+KPKVGINGFGRIGRLVLRAA+EK TVDVVA+NDPFI +DYMVYMFKYDSTHG+F G V
Sbjct: 1   MSKPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSV 60

Query: 192 EAKDGKLVVDG----HAMSVYNKRNPDEIPWDHDHCYYVVE 302
            A+ GKL+V      H +SV+N ++P EIPW  D   YVVE
Sbjct: 61  SAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVE 101
>sp|O01360|G3P_ONCVO Glyceraldehyde 3-phosphate-dehydrogenase (GAPDH) (Larval antigen
           OvB95)
          Length = 339

 Score =  141 bits (356), Expect = 4e-34
 Identities = 67/101 (66%), Positives = 82/101 (81%), Gaps = 4/101 (3%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           M+KPK+GINGFGRIGRLVLRAA+EK TV+VVA+NDPFI +DYMVYMFKYDSTHG+F GHV
Sbjct: 1   MSKPKIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHGRFKGHV 60

Query: 192 EAKDGKLVVDG----HAMSVYNKRNPDEIPWDHDHCYYVVE 302
            A+ GKL+V      H ++V+N ++P EIPW  +   YVVE
Sbjct: 61  SAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVE 101
>sp|P34920|G3PC_CHOCR Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
          Length = 335

 Score =  139 bits (351), Expect = 2e-33
 Identities = 66/97 (68%), Positives = 78/97 (80%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           MT PKVGINGFGRIGRLVLRAA+EKGT  VVA+NDPFI+LDYM YM KYDSTHG++ G V
Sbjct: 1   MTAPKVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYAGDV 60

Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
             KDGKL VDG++++V+  R+P EIPW      Y+VE
Sbjct: 61  SIKDGKLQVDGNSITVFAHRDPAEIPWATAAADYIVE 97
>sp|P54270|G3PC_GRAVE Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
          Length = 335

 Score =  139 bits (351), Expect = 2e-33
 Identities = 64/97 (65%), Positives = 80/97 (82%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           MT P+VGINGFGRIGRLVLRAA+EK T+ VVA+NDPFI+L+YM YMFK+DSTHG++ G V
Sbjct: 1   MTVPQVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYAGSV 60

Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           E KDGKL+V+G ++++Y  R+P EIPW      YVVE
Sbjct: 61  ETKDGKLIVNGKSITIYGHRDPAEIPWAEAGADYVVE 97
>sp|Q9Y796|G3P_CRYCU Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 337

 Score =  138 bits (348), Expect = 3e-33
 Identities = 65/93 (69%), Positives = 76/93 (81%)
 Frame = +3

Query: 24  KVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKD 203
           KVGINGFGRIGR+VLR ALE G +DVVA+NDPFI+LDYMVYMFKYDSTHG+F G VE KD
Sbjct: 4   KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVETKD 63

Query: 204 GKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           GKLV++G  +SV+ +R+P  IPW      YVVE
Sbjct: 64  GKLVIEGKPISVFGERDPAAIPWGKAGADYVVE 96
>sp|P78958|G3P1_SCHPO Glyceraldehyde-3-phosphate dehydrogenase 1 (GAPDH 1)
          Length = 336

 Score =  135 bits (341), Expect = 2e-32
 Identities = 63/97 (64%), Positives = 77/97 (79%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           M  PKVGINGFGRIGR+VLR AL   T+ VVA+NDPFI+L+YM YMFKYDSTHG+F G V
Sbjct: 1   MAIPKVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSV 60

Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           E KDGKLV+DG+A+ V+N+R+P +I W      YV+E
Sbjct: 61  EIKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIE 97
>sp|O43026|G3P2_SCHPO Glyceraldehyde-3-phosphate dehydrogenase 2 (GAPDH 2)
          Length = 335

 Score =  135 bits (341), Expect = 2e-32
 Identities = 62/97 (63%), Positives = 75/97 (77%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           M  PKVGINGFGRIGR+VLR A+  G + VVA+NDPFI+LDYM YMFKYDSTHG+F G V
Sbjct: 1   MAIPKVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSV 60

Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           E K GKLV+DGH++ V+N+R+P  I W      YV+E
Sbjct: 61  ETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIE 97
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
          Length = 334

 Score =  134 bits (338), Expect = 5e-32
 Identities = 61/95 (64%), Positives = 77/95 (81%)
 Frame = +3

Query: 18  KPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEA 197
           K KVG++GFGRIGRLV RAA   G VD+VA+NDPFI+L YMVYMF+YDSTHGKFHG V+A
Sbjct: 2   KVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 61

Query: 198 KDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           +DGKLV+DG A++++ +R+P+ I W      YVVE
Sbjct: 62  EDGKLVIDGKAITIFQERDPENIKWGDAGTAYVVE 96
>sp|P32638|G3P_SCHCO Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 337

 Score =  134 bits (336), Expect = 9e-32
 Identities = 61/93 (65%), Positives = 76/93 (81%)
 Frame = +3

Query: 24  KVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKD 203
           KVGINGFGRIGR+VLR AL+ G ++VVA+NDPFI LDYMVYMFKYD+ HG++ G VE KD
Sbjct: 4   KVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYKGTVEVKD 63

Query: 204 GKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           GKLVVDGHA++V+ ++NP +I W      Y+VE
Sbjct: 64  GKLVVDGHAITVFAEKNPADIKWGSAGADYIVE 96
>sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH)
          Length = 335

 Score =  133 bits (335), Expect = 1e-31
 Identities = 60/97 (61%), Positives = 79/97 (81%)
 Frame = +3

Query: 12  MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
           M K KVG+NGFGRIGRLV RAA   G VD+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V
Sbjct: 1   MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 60

Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
           +A++GKLV++G+ ++++ +R+P +I W      YVVE
Sbjct: 61  KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVE 97
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,755,398
Number of Sequences: 369166
Number of extensions: 738135
Number of successful extensions: 2341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)