Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F19
(304 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48812|G3P_BRUMA Glyceraldehyde-3-phosphate dehydrogenas... 142 2e-34
sp|O01360|G3P_ONCVO Glyceraldehyde 3-phosphate-dehydrogenas... 141 4e-34
sp|P34920|G3PC_CHOCR Glyceraldehyde-3-phosphate dehydrogena... 139 2e-33
sp|P54270|G3PC_GRAVE Glyceraldehyde-3-phosphate dehydrogena... 139 2e-33
sp|Q9Y796|G3P_CRYCU Glyceraldehyde-3-phosphate dehydrogenas... 138 3e-33
sp|P78958|G3P1_SCHPO Glyceraldehyde-3-phosphate dehydrogena... 135 2e-32
sp|O43026|G3P2_SCHPO Glyceraldehyde-3-phosphate dehydrogena... 135 2e-32
sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 134 5e-32
sp|P32638|G3P_SCHCO Glyceraldehyde-3-phosphate dehydrogenas... 134 9e-32
sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 133 1e-31
>sp|P48812|G3P_BRUMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 339
Score = 142 bits (358), Expect = 2e-34
Identities = 70/101 (69%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
M+KPKVGINGFGRIGRLVLRAA+EK TVDVVA+NDPFI +DYMVYMFKYDSTHG+F G V
Sbjct: 1 MSKPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSV 60
Query: 192 EAKDGKLVVDG----HAMSVYNKRNPDEIPWDHDHCYYVVE 302
A+ GKL+V H +SV+N ++P EIPW D YVVE
Sbjct: 61 SAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVE 101
>sp|O01360|G3P_ONCVO Glyceraldehyde 3-phosphate-dehydrogenase (GAPDH) (Larval antigen
OvB95)
Length = 339
Score = 141 bits (356), Expect = 4e-34
Identities = 67/101 (66%), Positives = 82/101 (81%), Gaps = 4/101 (3%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
M+KPK+GINGFGRIGRLVLRAA+EK TV+VVA+NDPFI +DYMVYMFKYDSTHG+F GHV
Sbjct: 1 MSKPKIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHGRFKGHV 60
Query: 192 EAKDGKLVVDG----HAMSVYNKRNPDEIPWDHDHCYYVVE 302
A+ GKL+V H ++V+N ++P EIPW + YVVE
Sbjct: 61 SAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVE 101
>sp|P34920|G3PC_CHOCR Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 335
Score = 139 bits (351), Expect = 2e-33
Identities = 66/97 (68%), Positives = 78/97 (80%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
MT PKVGINGFGRIGRLVLRAA+EKGT VVA+NDPFI+LDYM YM KYDSTHG++ G V
Sbjct: 1 MTAPKVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYAGDV 60
Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
KDGKL VDG++++V+ R+P EIPW Y+VE
Sbjct: 61 SIKDGKLQVDGNSITVFAHRDPAEIPWATAAADYIVE 97
>sp|P54270|G3PC_GRAVE Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 335
Score = 139 bits (351), Expect = 2e-33
Identities = 64/97 (65%), Positives = 80/97 (82%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
MT P+VGINGFGRIGRLVLRAA+EK T+ VVA+NDPFI+L+YM YMFK+DSTHG++ G V
Sbjct: 1 MTVPQVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYAGSV 60
Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
E KDGKL+V+G ++++Y R+P EIPW YVVE
Sbjct: 61 ETKDGKLIVNGKSITIYGHRDPAEIPWAEAGADYVVE 97
>sp|Q9Y796|G3P_CRYCU Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 337
Score = 138 bits (348), Expect = 3e-33
Identities = 65/93 (69%), Positives = 76/93 (81%)
Frame = +3
Query: 24 KVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKD 203
KVGINGFGRIGR+VLR ALE G +DVVA+NDPFI+LDYMVYMFKYDSTHG+F G VE KD
Sbjct: 4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVETKD 63
Query: 204 GKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
GKLV++G +SV+ +R+P IPW YVVE
Sbjct: 64 GKLVIEGKPISVFGERDPAAIPWGKAGADYVVE 96
>sp|P78958|G3P1_SCHPO Glyceraldehyde-3-phosphate dehydrogenase 1 (GAPDH 1)
Length = 336
Score = 135 bits (341), Expect = 2e-32
Identities = 63/97 (64%), Positives = 77/97 (79%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
M PKVGINGFGRIGR+VLR AL T+ VVA+NDPFI+L+YM YMFKYDSTHG+F G V
Sbjct: 1 MAIPKVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSV 60
Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
E KDGKLV+DG+A+ V+N+R+P +I W YV+E
Sbjct: 61 EIKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIE 97
>sp|O43026|G3P2_SCHPO Glyceraldehyde-3-phosphate dehydrogenase 2 (GAPDH 2)
Length = 335
Score = 135 bits (341), Expect = 2e-32
Identities = 62/97 (63%), Positives = 75/97 (77%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
M PKVGINGFGRIGR+VLR A+ G + VVA+NDPFI+LDYM YMFKYDSTHG+F G V
Sbjct: 1 MAIPKVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSV 60
Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
E K GKLV+DGH++ V+N+R+P I W YV+E
Sbjct: 61 ETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIE 97
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 334
Score = 134 bits (338), Expect = 5e-32
Identities = 61/95 (64%), Positives = 77/95 (81%)
Frame = +3
Query: 18 KPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEA 197
K KVG++GFGRIGRLV RAA G VD+VA+NDPFI+L YMVYMF+YDSTHGKFHG V+A
Sbjct: 2 KVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 61
Query: 198 KDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
+DGKLV+DG A++++ +R+P+ I W YVVE
Sbjct: 62 EDGKLVIDGKAITIFQERDPENIKWGDAGTAYVVE 96
>sp|P32638|G3P_SCHCO Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 337
Score = 134 bits (336), Expect = 9e-32
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = +3
Query: 24 KVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKD 203
KVGINGFGRIGR+VLR AL+ G ++VVA+NDPFI LDYMVYMFKYD+ HG++ G VE KD
Sbjct: 4 KVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYKGTVEVKD 63
Query: 204 GKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
GKLVVDGHA++V+ ++NP +I W Y+VE
Sbjct: 64 GKLVVDGHAITVFAEKNPADIKWGSAGADYIVE 96
>sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH)
Length = 335
Score = 133 bits (335), Expect = 1e-31
Identities = 60/97 (61%), Positives = 79/97 (81%)
Frame = +3
Query: 12 MTKPKVGINGFGRIGRLVLRAALEKGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHV 191
M K KVG+NGFGRIGRLV RAA G VD+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V
Sbjct: 1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 60
Query: 192 EAKDGKLVVDGHAMSVYNKRNPDEIPWDHDHCYYVVE 302
+A++GKLV++G+ ++++ +R+P +I W YVVE
Sbjct: 61 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVE 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,755,398
Number of Sequences: 369166
Number of extensions: 738135
Number of successful extensions: 2341
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)