Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F14
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isofor... 509 e-144
sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondria... 509 e-144
sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial ... 508 e-144
sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondria... 508 e-143
sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondria... 497 e-140
sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondria... 483 e-136
sp|P26854|ATPAM_MARPO ATP synthase alpha chain, mitochondrial 448 e-125
sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondria... 440 e-123
sp|P05493|ATPAM_PEA ATP synthase alpha chain, mitochondrial 439 e-123
sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondria... 438 e-123
>sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isoform, mitochondrial precursor
Length = 553
Score = 509 bits (1310), Expect = e-144
Identities = 258/286 (90%), Positives = 274/286 (95%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+PYSGC+MGEYFR
Sbjct: 242 LYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR 301
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GG
Sbjct: 302 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGG 361
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 362 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 421
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
QT+AMKQVAG MKLELAQYREVAAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAI
Sbjct: 422 QTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAI 481
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL IR
Sbjct: 482 EEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIR 527
>sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 509 bits (1310), Expect = e-144
Identities = 258/286 (90%), Positives = 275/286 (96%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+PYSGC+MGEYFR
Sbjct: 242 LYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR 301
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GG
Sbjct: 302 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGG 361
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 362 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 421
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
QT+AMKQVAG MKLELAQYREVAAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAI
Sbjct: 422 QTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAI 481
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL +IR
Sbjct: 482 EEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQSLLGNIR 527
>sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial precursor
Length = 543
Score = 508 bits (1309), Expect = e-144
Identities = 258/286 (90%), Positives = 275/286 (96%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+PYSGC+MGEYFR
Sbjct: 232 LYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR 291
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GG
Sbjct: 292 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGG 351
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 352 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 411
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
QT+AMKQVAG MKLELAQYREVAAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAI
Sbjct: 412 QTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAI 471
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL +IR
Sbjct: 472 EEQVAVIYAGVRGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIR 517
>sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 508 bits (1307), Expect = e-143
Identities = 258/286 (90%), Positives = 274/286 (95%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+PYSGC+MGEYFR
Sbjct: 242 LYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR 301
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GG
Sbjct: 302 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGG 361
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 362 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 421
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
QT+AMKQVAG MKLELAQYREVAAFAQFGSDLDA+TQQLL+RGVRLTELLKQGQY PMAI
Sbjct: 422 QTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAI 481
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ VIYAGVRGYLDK++PSKITKFE +L +V+ HQ LL IR
Sbjct: 482 EEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIR 527
>sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondrial precursor (Protein
bellwether)
Length = 552
Score = 497 bits (1279), Expect = e-140
Identities = 252/285 (88%), Positives = 270/285 (94%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYCIYVAIGQKRSTVAQ+VKRL+++ AM Y+++VSATASDAAPLQYL+PYSGCAMGEYFR
Sbjct: 241 LYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSVIVSATASDAAPLQYLAPYSGCAMGEYFR 300
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
D GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS GG
Sbjct: 301 DKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPAMGG 360
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 361 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 420
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
QTKAMKQVAG MKLELAQYREVAAFAQFGSDLDA+TQQLLNRGVRLTELLKQGQYVPMAI
Sbjct: 421 QTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAI 480
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDI 857
EDQ+ VIY GVRG+LDKMDP+KITKFE+E+L+++ + Q LL I
Sbjct: 481 EDQVAVIYCGVRGHLDKMDPAKITKFEKEFLQHIKTSEQALLDTI 525
>sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 483 bits (1243), Expect = e-136
Identities = 249/286 (87%), Positives = 264/286 (92%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYCIYVAIGQKR L++ADAMKYTIVVS TASDAAPLQYL+PYSGC+MGEYFR
Sbjct: 243 LYCIYVAIGQKR---------LTDADAMKYTIVVSRTASDAAPLQYLAPYSGCSMGEYFR 293
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNG HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM+D +GG
Sbjct: 294 DNGTHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDHFGG 353
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 354 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 413
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
QT+AMKQVAG MKLELAQYREVAAFAQFGSDLDA+TQQLLNRGVRLTELLKQGQYVPMAI
Sbjct: 414 QTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAI 473
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ VIYAGVRG+LDKM+PSKITKFE +L +V HQ+LL IR
Sbjct: 474 EEQVTVIYAGVRGHLDKMEPSKITKFESAFLAHVKSQHQELLATIR 519
>sp|P26854|ATPAM_MARPO ATP synthase alpha chain, mitochondrial
Length = 513
Score = 448 bits (1152), Expect = e-125
Identities = 228/274 (83%), Positives = 250/274 (91%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYC+YVAIGQKRSTVAQLVK LS A A++Y+I+V+ATASD APLQ+L+PYSGCAMGEYFR
Sbjct: 201 LYCVYVAIGQKRSTVAQLVKILSEAGALEYSIIVAATASDPAPLQFLAPYSGCAMGEYFR 260
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNG HALIIYDDLSKQ+VAYRQMSLLLRRPPGREA+PGDVFYLHSRLLERAAKMSD G
Sbjct: 261 DNGMHALIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKMSDQTGA 320
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY+G RPAINVGLSVSRVGSAA
Sbjct: 321 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYRGSRPAINVGLSVSRVGSAA 380
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
Q KAMKQV G +KLELAQYREVAAFAQFGSDLDA+TQ LLNRG RLTE+LKQ QY P+ I
Sbjct: 381 QLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQYLLNRGARLTEILKQAQYSPIPI 440
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNV 824
E QIVVIYA V+GYLD++ + IT +EQE LK++
Sbjct: 441 EKQIVVIYAAVKGYLDQIPVALITHYEQELLKSI 474
>sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondrial precursor
Length = 548
Score = 440 bits (1131), Expect = e-123
Identities = 220/286 (76%), Positives = 254/286 (88%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYC+YVA+GQKRSTVAQLV+ L DA+KY+I+V+ATAS+AAPLQY++P++ A+GE+FR
Sbjct: 239 LYCVYVAVGQKRSTVAQLVQTLEQHDALKYSIIVAATASEAAPLQYIAPFTAAAIGEWFR 298
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNG+HALIIYDDLSKQAVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLERAAKMS+ GG
Sbjct: 299 DNGRHALIIYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSEKNGG 358
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE ELFYKGIRPAINVGLSVSRVGSAA
Sbjct: 359 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAA 418
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
Q KA+KQVAG +KL LAQYREVAAFAQFGSDLDAST+Q L RG RLT+LLKQ QY P+A
Sbjct: 419 QVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLARGERLTQLLKQNQYSPLAA 478
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ +IYAGV GYLD +D S+I +FE ++L + NH +++ IR
Sbjct: 479 EEQVPLIYAGVNGYLDNIDISRIAEFETKFLAYLKANHDEIVSAIR 524
>sp|P05493|ATPAM_PEA ATP synthase alpha chain, mitochondrial
Length = 507
Score = 439 bits (1128), Expect = e-123
Identities = 225/286 (78%), Positives = 253/286 (88%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYC+YVAIGQKRSTVAQLV+ LS A+A++Y+I+V+ATASD APLQ+L+PYSGCAMGEYFR
Sbjct: 202 LYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFR 261
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNG HALIIYDDLSKQAVAYRQMSLLLRRPPGREA+PGDVFYLHSRLLERAAK SD G
Sbjct: 262 DNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGA 321
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGSAA
Sbjct: 322 GSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAA 381
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
Q KAMKQV G +KLELAQYREVAAFAQFGSDLDA+TQ LLNRG RLTE+LKQ QY P+ I
Sbjct: 382 QLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPI 441
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E QI+VIYA V G+ D+M KI ++E++ L + Q+LL+ ++
Sbjct: 442 EKQILVIYAAVNGFCDRMPLDKIAQYERDILSTI---KQELLQSLK 484
>sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondrial precursor
Length = 536
Score = 438 bits (1127), Expect = e-123
Identities = 214/286 (74%), Positives = 258/286 (90%)
Frame = +3
Query: 3 LYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLSPYSGCAMGEYFR 182
LYC+YVA+GQKRSTVAQLV++L D++KY+I+V+ATAS++APLQYL+P+SGCAMGE+FR
Sbjct: 227 LYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLAPFSGCAMGEWFR 286
Query: 183 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDVYGG 362
DNGKH L++YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS +GG
Sbjct: 287 DNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPKHGG 346
Query: 363 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 542
GSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAINVGLSVSRVGSAA
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAA 406
Query: 543 QTKAMKQVAGRMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMAI 722
Q KAMKQVAG++KL LAQYREVA+FAQFGSDLDA T+ L+RG+RLTELLKQ QY P+A+
Sbjct: 407 QVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAV 466
Query: 723 EDQIVVIYAGVRGYLDKMDPSKITKFEQEYLKNVLVNHQDLLKDIR 860
E+Q+ +IY GV+GYLDK+ ++ +FE +++ + + ++++ IR
Sbjct: 467 EEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYLRSSGAEIMEAIR 512
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,602,545
Number of Sequences: 369166
Number of extensions: 1957206
Number of successful extensions: 5424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5222
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)