Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F13
(341 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB 30 1.7
sp|Q90WJ8|AJL2_ANGJA Lactose-binding lectin l-2 precursor (... 29 3.9
sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase) 28 8.6
>sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB
Length = 373
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 67 WADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEEHRVDSVE 246
+A GE++ K GG AR + VVVG G + Y HR+D++E
Sbjct: 213 YATGEHLRKAVPSGG---------ARHPIEFYVVVGDEIAGIEAGVYHYNVRHHRLDAIE 263
Query: 247 VLCCSTK 267
+ S K
Sbjct: 264 IASTSLK 270
>sp|Q90WJ8|AJL2_ANGJA Lactose-binding lectin l-2 precursor (Ajl-2)
Length = 166
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +1
Query: 46 HKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEE 225
H+G W W+DG + N G+P ++ GG + C + YGG++
Sbjct: 100 HEGRSWLWSDGTSASAEGDFSMWNPGEP-----NDAGG---------KEDCVHDNYGGQK 145
Query: 226 H 228
H
Sbjct: 146 H 146
>sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase)
Length = 994
Score = 27.7 bits (60), Expect = 8.6
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Frame = +1
Query: 13 YEVLVESSILNHKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGGQV------VVG 174
Y+ LVE G+ W W D A+ G+ DG P++ + G ++ V G
Sbjct: 525 YQTLVEQYDSFIGGFVWEWCD------HAIQTGMKDGNPIFRYGGDFGEKLHDGNFCVDG 578
Query: 175 KYFPQH--GCGYFPYGGEEHR 231
FP GY+ + +EHR
Sbjct: 579 IVFPNRVPHEGYYEF-KQEHR 598
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,354,883
Number of Sequences: 369166
Number of extensions: 817560
Number of successful extensions: 2460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)