Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F12
(343 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZ52|ANTR1_MOUSE Anthrax toxin receptor 1 precursor (T... 43 3e-04
sp|Q9H6X2|ANTR1_HUMAN Anthrax toxin receptor 1 precursor (T... 43 3e-04
sp|Q60847|COCA1_MOUSE Collagen alpha 1(XII) chain precursor 40 0.002
sp|Q28902|COCA1_RABIT Collagen alpha 1(XII) chain 39 0.004
sp|Q99715|COCA1_HUMAN Collagen alpha 1(XII) chain precursor 39 0.004
sp|P13944|COCA1_CHICK Collagen alpha 1(XII) chain precursor... 37 0.014
sp|Q61703|ITIH2_MOUSE Inter-alpha-trypsin inhibitor heavy c... 33 0.16
sp|P37561|YABS_BACSU Hypothetical protein yabS 33 0.16
sp|P12110|CO6A2_HUMAN Collagen alpha 2(VI) chain precursor 33 0.20
sp|O02668|ITIH2_PIG Inter-alpha-trypsin inhibitor heavy cha... 32 0.59
>sp|Q9CZ52|ANTR1_MOUSE Anthrax toxin receptor 1 precursor (Tumor endothelial marker 8)
Length = 562
Score = 42.7 bits (99), Expect = 3e-04
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Frame = +3
Query: 18 TVSVMILVTDGQ--SNLGIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRIS-STNRYY 188
T SV+I +TDG+ +L E +A R+ G + C+G+ D ++ QL RI+ S + +
Sbjct: 139 TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD-FNETQLARIADSKDHVF 197
Query: 189 HIND-YKALNSVSVEAMTKESC-QAVNNKPKKTC--QDFELAGRQELCKFAKN 335
+ND ++AL + + ++ K+SC + + +P C + F++ R + A+N
Sbjct: 198 PVNDGFQALQGI-IHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARN 249
>sp|Q9H6X2|ANTR1_HUMAN Anthrax toxin receptor 1 precursor (Tumor endothelial marker 8)
Length = 564
Score = 42.7 bits (99), Expect = 3e-04
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Frame = +3
Query: 18 TVSVMILVTDGQ--SNLGIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRIS-STNRYY 188
T SV+I +TDG+ +L E +A R+ G + C+G+ D ++ QL RI+ S + +
Sbjct: 141 TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD-FNETQLARIADSKDHVF 199
Query: 189 HIND-YKALNSVSVEAMTKESC-QAVNNKPKKTC--QDFELAGRQELCKFAKN 335
+ND ++AL + + ++ K+SC + + +P C + F++ R + A+N
Sbjct: 200 PVNDGFQALQGI-IHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARN 251
>sp|Q60847|COCA1_MOUSE Collagen alpha 1(XII) chain precursor
Length = 3119
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +3
Query: 33 ILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGI--TDEISKDQLMRISSTNRYYHINDYK 206
+L+TDG+S + EA ++++++EGV + IGI DE+ + Y++ D++
Sbjct: 1309 VLITDGKSQDDV--EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFE 1366
Query: 207 ALNSVSVEAMTKESCQAV 260
+L+ + V+ +T C +V
Sbjct: 1367 SLSKI-VDDLTINLCNSV 1383
Score = 37.4 bits (85), Expect = 0.011
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +3
Query: 9 RNDTVSVMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRISSTNRYY 188
R++ VMIL+TDG+S+ + A ++RN V I +G+ D + + +L I+S
Sbjct: 542 RSNVPKVMILITDGESSDAFRD--PAIKLRNSDVEIFAVGVKDAV-RSELEAIASPPAET 598
Query: 189 H---INDYKALNSVSVEAMTKESCQAVNNK 269
H + D+ A +S +T+ C + +
Sbjct: 599 HVFTVEDFDAFQRISF-VLTQSICLRIEQE 627
Score = 36.2 bits (82), Expect = 0.024
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 27 VMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKD--QLMRISSTNRYYHIND 200
V I++TDG+S + E A+E+RN GV + +GI +K+ Q+ S N +++ +
Sbjct: 244 VGIIITDGKSQDEV--EIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVAN 301
Query: 201 YKALNSVSVEAMTKESCQAVNNK 269
+ A+ + E ++ + C V+ +
Sbjct: 302 FDAIVDIQNEIIS-QVCSGVDEQ 323
>sp|Q28902|COCA1_RABIT Collagen alpha 1(XII) chain
Length = 639
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +3
Query: 33 ILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGI--TDEISKDQLMRISSTNRYYHINDYK 206
+L+TDG+S + EA ++++++EGV + IGI DE+ + Y++ D+
Sbjct: 48 VLITDGKSQDDV--EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFD 105
Query: 207 ALNSVSVEAMTKESCQAV 260
+L+ + V+ +T C +V
Sbjct: 106 SLSKI-VDDLTINLCNSV 122
>sp|Q99715|COCA1_HUMAN Collagen alpha 1(XII) chain precursor
Length = 3063
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +3
Query: 9 RNDTVSVMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRISSTNRYY 188
R++ VMIL+TDG+S+ + A ++RN V I +G+ D + + +L I+S
Sbjct: 538 RSNVPKVMILITDGKSSDAFRD--PAIKLRNSDVEIFAVGVKDAV-RSELEAIASPPAET 594
Query: 189 H---INDYKALNSVSVEAMTKESCQAVNNK 269
H + D+ A +S E +T+ C + +
Sbjct: 595 HVFTVEDFDAFQRISFE-LTQSICLRIEQE 623
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +3
Query: 33 ILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGI--TDEISKDQLMRISSTNRYYHINDYK 206
+L+TDG+S + EA ++++++EGV + IGI DE+ + Y++ D++
Sbjct: 1305 VLITDGKSQDDV--EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHDYNVADFE 1362
Query: 207 ALNSVSVEAMTKESCQAV 260
+L+ + V+ +T C +V
Sbjct: 1363 SLSRI-VDDLTINLCNSV 1379
Score = 37.4 bits (85), Expect = 0.011
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 27 VMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKD--QLMRISSTNRYYHIND 200
V I++TDG+S + E A+E+RN GV + +GI +K+ Q+ S N +++ +
Sbjct: 244 VAIIITDGKSQDEV--EIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVAN 301
Query: 201 YKALNSVSVEAMTKESCQAVNNK 269
+ A+ + E ++ + C V+ +
Sbjct: 302 FDAIVDIQNEIIS-QVCSGVDEQ 323
>sp|P13944|COCA1_CHICK Collagen alpha 1(XII) chain precursor (Fibrochimerin)
Length = 3124
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +3
Query: 9 RNDTVSVMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRISS---TN 179
R + VMIL+TDG+S+ K A ++R+ V I +G+ D + + +L I+S
Sbjct: 537 RPNVPRVMILITDGKSSDAFK--EPAIKLRDADVEIFAVGVKDAV-RTELEAIASPPAET 593
Query: 180 RYYHINDYKALNSVSVEAMTKESCQAVNNK 269
Y + D+ A +S E +T+ C + +
Sbjct: 594 HVYTVEDFDAFQRISFE-LTQSVCLRIEQE 622
Score = 33.1 bits (74), Expect = 0.20
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 33 ILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGI--TDEISKDQLMRISSTNRYYHINDYK 206
+L+TDG+S + ++ +R+EGV + IGI DE Q+ Y++ D+
Sbjct: 1305 VLITDGKSQDDV--VTPSRRLRDEGVELYAIGIKNADENELKQIATDPDDIHAYNVADFS 1362
Query: 207 ALNSVSVEAMTKESCQAV 260
L S+ E +T C +V
Sbjct: 1363 FLASIG-EDVTTNLCNSV 1379
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 27 VMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRISSTNRYYHI 194
V I++TDG++ + E A+E+RN GV + +GI +K +L I+S H+
Sbjct: 243 VAIVITDGKAQDEV--EIPARELRNIGVEVFSLGIKAADAK-ELKLIASQPSLKHV 295
>sp|Q61703|ITIH2_MOUSE Inter-alpha-trypsin inhibitor heavy chain H2 precursor (ITI heavy
chain H2) (Inter-alpha-inhibitor heavy chain 2)
Length = 946
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 15 DTVSVMILVTDGQSNLG----IKPEAQAQEIRNEGVHIICIGITDEISKDQLMRISSTNR 182
D+VS++ILV+DG +G K + ++ + + + +GI ++ D L R+S+ NR
Sbjct: 411 DSVSLIILVSDGDPTVGELKLSKIQKNVKQSIQDNISLFSLGIGFDVDYDFLKRLSNENR 470
>sp|P37561|YABS_BACSU Hypothetical protein yabS
Length = 245
Score = 33.5 bits (75), Expect = 0.16
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +3
Query: 12 NDTVSVMILVTDGQSNLGIKPEAQAQEIRNEGVHIICIGITDEISKD-----QLMRISST 176
N ++ ++L+TDG SN G P A A + +G+ + IGI +E D ++ I+
Sbjct: 3 NGHLNQILLITDGCSNHGEDPLAMAAFAKEQGITVNVIGIMEENQIDPEAMKEVEGIALA 62
Query: 177 NRYYHINDYKALNSVSVEAMTKES 248
H Y + S +V+ +TK++
Sbjct: 63 GGGVHQVVYASQLSQTVQMVTKKA 86
>sp|P12110|CO6A2_HUMAN Collagen alpha 2(VI) chain precursor
Length = 1019
Score = 33.1 bits (74), Expect = 0.20
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 3 NKRNDTVSVMILVTDGQSNL----GIKPEAQAQEIRNEGVHIICIGITDEISKDQLMRIS 170
++ TV +++TDG GIK QA+ R EG+ + + + + L I+
Sbjct: 148 DRSKGTVHFAVVITDGHVTGSPCGGIK--LQAERAREEGIRLFAVAPNQNLKEQGLRDIA 205
Query: 171 STNRYYHINDYKALNSVSVE 230
ST + NDY + S E
Sbjct: 206 STPHELYRNDYATMLPDSTE 225
>sp|O02668|ITIH2_PIG Inter-alpha-trypsin inhibitor heavy chain H2 precursor (ITI heavy
chain H2) (Inter-alpha-inhibitor heavy chain 2)
Length = 935
Score = 31.6 bits (70), Expect = 0.59
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 15 DTVSVMILVTDGQSNLG----IKPEAQAQEIRNEGVHIICIGITDEISKDQLMRISSTNR 182
++VS++ILV+DG +G K + ++ + V + +GI ++ D L R+S+ NR
Sbjct: 400 NSVSLIILVSDGDPTVGELQLSKIQKNVKQNIQDNVSLFSLGIGFDVDYDFLKRLSNDNR 459
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,023,335
Number of Sequences: 369166
Number of extensions: 429573
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)