Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F11
(462 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 93 3e-19
sp|Q8BI21|RNF38_MOUSE RING finger protein 38 92 7e-19
sp|Q9Y252|RNF6_HUMAN RING finger protein 6 (RING-H2 protein) 68 9e-12
sp|Q84W40|ATL1N_ARATH RING-H2 finger protein ATL1N precursor 65 1e-10
sp|Q9FKX5|ATL5P_ARATH RING-H2 finger protein ATL5P 64 1e-10
sp|Q8RXX9|ATL3B_ARATH RING-H2 finger protein ATL3B precurso... 64 2e-10
sp|Q06003|GOLI_DROME Goliath protein precursor (Protein g1) 64 2e-10
sp|Q9FL07|ATL5I_ARATH RING-H2 finger protein ATL5I 63 3e-10
sp|Q8GT74|ATL2B_ARATH RING-H2 finger protein ATL2B (NEP1-in... 63 3e-10
sp|Q8GT75|ATL4M_ARATH RING-H2 finger protein ATL4M (NEP1-in... 63 4e-10
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38
Length = 515
Score = 93.2 bits (230), Expect = 3e-19
Identities = 43/90 (47%), Positives = 59/90 (65%)
Frame = +1
Query: 1 RGITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIR 180
RG+T+ ++++LP++R+ N + E L C+VC+ DFES+Q +R
Sbjct: 436 RGLTKADIEQLPSYRFNP-----------------NNHQSEQTL-CVVCMCDFESRQLLR 477
Query: 181 VLRCEHEFHAKCIDKWLKINRTCPLCRADA 270
VL C HEFHAKC+DKWLK NRTCP+CRADA
Sbjct: 478 VLPCNHEFHAKCVDKWLKANRTCPICRADA 507
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38
Length = 518
Score = 91.7 bits (226), Expect = 7e-19
Identities = 41/90 (45%), Positives = 59/90 (65%)
Frame = +1
Query: 1 RGITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIR 180
RG+T+ ++++LP++R+ +N + + C+VC+ DFES+Q +R
Sbjct: 439 RGLTKADIEQLPSYRFNP------------------SNHQSEQTLCVVCMCDFESRQLLR 480
Query: 181 VLRCEHEFHAKCIDKWLKINRTCPLCRADA 270
VL C HEFHAKC+DKWLK NRTCP+CRADA
Sbjct: 481 VLPCNHEFHAKCVDKWLKGNRTCPICRADA 510
>sp|Q9Y252|RNF6_HUMAN RING finger protein 6 (RING-H2 protein)
Length = 685
Score = 68.2 bits (165), Expect = 9e-12
Identities = 35/99 (35%), Positives = 47/99 (47%)
Frame = +1
Query: 1 RGITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIR 180
RG+T+E++D L T Y E NSI C VC+ D+ + +R
Sbjct: 604 RGLTKEQIDNLSTRHY----------EHNSIDSELGKI-------CSVCISDYVTGNKLR 646
Query: 181 VLRCEHEFHAKCIDKWLKINRTCPLCRADAFDGSAQKDG 297
L C HEFH CID+WL N TCP+CR + +G
Sbjct: 647 QLPCMHEFHIHCIDRWLSENCTCPICRQPVLGSNIANNG 685
>sp|Q84W40|ATL1N_ARATH RING-H2 finger protein ATL1N precursor
Length = 404
Score = 64.7 bits (156), Expect = 1e-10
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 1 RGITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIR 180
RG+ ++ PT +Y S K ++ L+C VCL +FE + +R
Sbjct: 114 RGLDASIIETFPTFQY---------------STVKTLRIGKEALECSVCLNEFEDDETLR 158
Query: 181 VL-RCEHEFHAKCIDKWLKINRTCPLCRAD 267
++ +C H FH CID WL+ + TCPLCRAD
Sbjct: 159 LIPKCCHVFHPGCIDAWLRSHTTCPLCRAD 188
>sp|Q9FKX5|ATL5P_ARATH RING-H2 finger protein ATL5P
Length = 221
Score = 64.3 bits (155), Expect = 1e-10
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 85 NSISDAKNTNSKEDILKCLVCLEDFESKQNIRVL-RCEHEFHAKCIDKWLKINRTCPLCR 261
N I + T++ +I+ C VCL+DF+ + +R L C H FH CIDKWL+ + +CPLCR
Sbjct: 159 NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
>sp|Q8RXX9|ATL3B_ARATH RING-H2 finger protein ATL3B precursor (RING-H2 finger protein
ATL6)
Length = 398
Score = 63.9 bits (154), Expect = 2e-10
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 94 SDAKNTNSKEDILKCLVCLEDFESKQNIRVL-RCEHEFHAKCIDKWLKINRTCPLCRADA 270
SD K + L+C +CL +FE + +R+L +C+H FH CID WL+ + TCP+CRA+
Sbjct: 114 SDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173
Query: 271 FDGSAQ 288
+ A+
Sbjct: 174 AEQVAE 179
>sp|Q06003|GOLI_DROME Goliath protein precursor (Protein g1)
Length = 461
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/87 (35%), Positives = 47/87 (54%)
Frame = +1
Query: 7 ITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIRVL 186
+T++ + K+PT K SD K+ +S C +C+E ++ IR+L
Sbjct: 277 VTKKAIMKIPTKTGK-------------FSDEKDLDSD----CCAICIEAYKPTDTIRIL 319
Query: 187 RCEHEFHAKCIDKWLKINRTCPLCRAD 267
C+HEFH CID WL +RTCP+C+ D
Sbjct: 320 PCKHEFHKNCIDPWLIEHRTCPMCKLD 346
>sp|Q9FL07|ATL5I_ARATH RING-H2 finger protein ATL5I
Length = 376
Score = 63.2 bits (152), Expect = 3e-10
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 4 GITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIRV 183
G+ + +D LP YK + S + ++ C VCL +F K +R+
Sbjct: 107 GLDQAFIDALPVFHYK--------EIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRL 158
Query: 184 L-RCEHEFHAKCIDKWLKINRTCPLCRADAF 273
L C H FH CID WL+ N TCPLCR F
Sbjct: 159 LPMCSHAFHLNCIDTWLQSNSTCPLCRGTLF 189
>sp|Q8GT74|ATL2B_ARATH RING-H2 finger protein ATL2B (NEP1-interacting protein 2)
Length = 241
Score = 63.2 bits (152), Expect = 3e-10
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 1 RGITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIR 180
+G+T + ++K+P K +I+ NT++ E+ C VCL+DF+ + +R
Sbjct: 166 KGLTGDLVEKIP---------------KMTITGNNNTDASENTDSCSVCLQDFQLGETVR 210
Query: 181 VL-RCEHEFHAKCIDKWLKINRTCPLCRAD 267
L C H FH CID WL + +CP+CR D
Sbjct: 211 SLPHCHHMFHLPCIDNWLLRHGSCPMCRRD 240
>sp|Q8GT75|ATL4M_ARATH RING-H2 finger protein ATL4M (NEP1-interacting protein 1)
Length = 236
Score = 62.8 bits (151), Expect = 4e-10
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 1 RGITREELDKLPTHRYKAPSDKHKLKEKNSISDAKNTNSKEDILKCLVCLEDFESKQNIR 180
+G+T + +DK+P K K+ KN++ + N +S C VCL+DF+ + +R
Sbjct: 161 KGLTGDLVDKIP---------KIKITGKNNLDASGNKDS------CSVCLQDFQLGETVR 205
Query: 181 VL-RCEHEFHAKCIDKWLKINRTCPLCRAD 267
L C H FH CID WL + +CP+CR D
Sbjct: 206 SLPHCHHMFHLPCIDNWLFRHGSCPMCRRD 235
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,205,514
Number of Sequences: 369166
Number of extensions: 979463
Number of successful extensions: 3428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3346
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)