Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F09
(225 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21358|RMAR_CANGA Mitochondrial ribosomal protein VAR1 31 0.99
sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 30 1.7
sp|P25371|ADP1_YEAST Probable ATP-dependent permease precursor 29 2.9
sp|Q8K9B0|EX5C_BUCAP Exodeoxyribonuclease V gamma chain 28 6.4
sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility pro... 28 8.4
>sp|P21358|RMAR_CANGA Mitochondrial ribosomal protein VAR1
Length = 339
Score = 30.8 bits (68), Expect = 0.99
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 172 NILNISVYYF*LKHFPYFYQYYEFYLLN-LMNQCNYSFDNI 53
N++NI YY+ + ++ Y Y ++N LMN+ N + +N+
Sbjct: 112 NVINIRFYYYNMNNYNYNNNIYYINMINKLMNRLNINMNNL 152
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
Length = 1024
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 190 NFSETNNILNISVYYF*LKHFPYFYQYYEF-YLLNLMNQ--CNYSFDNIF 50
N+ TN LN+ Y F + + FY Y F LLN+ N+ N SF+NI+
Sbjct: 385 NYLTTNIFLNLK-YLFVIYYKHIFYNRYNFKLLLNIFNKNFYNISFNNIY 433
>sp|P25371|ADP1_YEAST Probable ATP-dependent permease precursor
Length = 1049
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 187 FSETNNILNISVYYF*LKHFPYFYQYYEFYLLN 89
F T NI N++ Y LK+F FY YE L+N
Sbjct: 955 FINTKNITNVAFKY--LKNFSVFYYAYESLLIN 985
>sp|Q8K9B0|EX5C_BUCAP Exodeoxyribonuclease V gamma chain
Length = 1061
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 13 FLCFLSTNSYLFKRYYQKNNYTGSSNLINKTHNTDKNKENVSIRNN 150
FL F + ++QKNN N++ K KEN+ +N+
Sbjct: 268 FLFFKKFKKIKYNNFFQKNNSNNLLNIVKNDFLNFKEKENLLKKNS 313
>sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility protein homolog (Fanconi anemia
group D1 protein homolog)
Length = 3343
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 49 KRYYQKNNYTGSSNLINKTHNTDKNKENVS 138
K Q NNYTGS K N+D +K + S
Sbjct: 1301 KNIKQDNNYTGSQRNAYKLENSDVSKSSTS 1330
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,000,452
Number of Sequences: 369166
Number of extensions: 244697
Number of successful extensions: 1064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)