Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F05
(602 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18944|COX2_CHICK Cytochrome c oxidase subunit 2 (Cytoch... 300 2e-81
sp|P50684|COX2_COTJA Cytochrome c oxidase subunit 2 (Cytoch... 289 4e-78
sp|P98019|COX2_ANAPL Cytochrome c oxidase subunit 2 (Cytoch... 282 4e-76
sp|P50666|COX2_CAIMO Cytochrome c oxidase subunit 2 (Cytoch... 278 8e-75
sp|O21400|COX2_STRCA Cytochrome c oxidase subunit 2 (Cytoch... 277 1e-74
sp|O03893|COX2_RHEAM Cytochrome c oxidase subunit 2 (Cytoch... 276 2e-74
sp|O03889|COX2_APTAU Cytochrome c oxidase subunit 2 (Cytoch... 276 2e-74
sp|O03891|COX2_DRONO Cytochrome c oxidase subunit 2 (Cytoch... 276 3e-74
sp|O03890|COX2_CASBE Cytochrome c oxidase subunit 2 (Cytoch... 276 4e-74
sp|O03892|COX2_NOTPE Cytochrome c oxidase subunit 2 (Cytoch... 272 4e-73
>sp|P18944|COX2_CHICK Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 300 bits (767), Expect = 2e-81
Identities = 156/199 (78%), Positives = 163/199 (81%)
Frame = +2
Query: 2 IVALAICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDE 181
+VALAICS +EKLSSNTVDAQEVE Y++DE
Sbjct: 29 MVALAICSLVLYLLTLMLMEKLSSNTVDAQEVELIWTILPAIVLVLLALPSLQILYMMDE 88
Query: 182 IDEPDLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESP 361
IDEPDLTLKAIGHQ Y TYEYTDFKDLSFDSY+TPTTDLPLGHFRLLEVDHRIVIP+ESP
Sbjct: 89 IDEPDLTLKAIGHQWYWTYEYTDFKDLSFDSYMTPTTDLPLGHFRLLEVDHRIVIPMESP 148
Query: 362 IRVIITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPI 541
IRVIITADDVLHS AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSY+PI
Sbjct: 149 IRVIITADDVLHSWAVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYMPI 208
Query: 542 VVESTPLKHFEA*SSLLSS 598
VVESTPLKHFEA SSLLSS
Sbjct: 209 VVESTPLKHFEAWSSLLSS 227
>sp|P50684|COX2_COTJA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 289 bits (739), Expect = 4e-78
Identities = 149/199 (74%), Positives = 159/199 (79%)
Frame = +2
Query: 2 IVALAICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDE 181
+VALAICS +KLSSNTVDAQEVE Y++DE
Sbjct: 29 MVALAICSLVLYLLTLMLTQKLSSNTVDAQEVELIWTILPAIVLVLLALPSLQILYMMDE 88
Query: 182 IDEPDLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESP 361
I+EPDLTLKAIGHQ Y +YEYTDFKDLSFDSY+TPTTDLP GHFRLLEVDHRIVIP+ESP
Sbjct: 89 IEEPDLTLKAIGHQWYWSYEYTDFKDLSFDSYMTPTTDLPQGHFRLLEVDHRIVIPMESP 148
Query: 362 IRVIITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPI 541
IR+IITADDVLHS AVP LGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSY+PI
Sbjct: 149 IRIIITADDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYMPI 208
Query: 542 VVESTPLKHFEA*SSLLSS 598
VVESTPLKHFE SSLLSS
Sbjct: 209 VVESTPLKHFETWSSLLSS 227
>sp|P98019|COX2_ANAPL Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 228
Score = 282 bits (722), Expect = 4e-76
Identities = 146/199 (73%), Positives = 157/199 (78%)
Frame = +2
Query: 2 IVALAICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDE 181
IVALAICS +EKLSSN VDAQEVE Y++DE
Sbjct: 29 IVALAICSLVLYLLAHMLMEKLSSNAVDAQEVELIWTILPAIVLVLLALPSLQILYMMDE 88
Query: 182 IDEPDLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESP 361
IDEPDLTLKAIGHQ Y +YEYTDFKDLSFDSY+ PTTDLP GHFRLLEVDHR+V+P+ESP
Sbjct: 89 IDEPDLTLKAIGHQWYWSYEYTDFKDLSFDSYMIPTTDLPNGHFRLLEVDHRVVVPMESP 148
Query: 362 IRVIITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPI 541
IRVIITA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PI
Sbjct: 149 IRVIITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPI 208
Query: 542 VVESTPLKHFEA*SSLLSS 598
VVESTPL +FEA SSLLSS
Sbjct: 209 VVESTPLPYFEAWSSLLSS 227
>sp|P50666|COX2_CAIMO Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 228
Score = 278 bits (711), Expect = 8e-75
Identities = 144/199 (72%), Positives = 155/199 (77%)
Frame = +2
Query: 2 IVALAICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDE 181
IVALAICS +EKLSSN VDAQEVE Y++DE
Sbjct: 29 IVALAICSLVLYLLAHMLMEKLSSNAVDAQEVELIWTILPAIVLVLLALPSLQILYMMDE 88
Query: 182 IDEPDLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESP 361
IDEPDLTLKAIGHQ Y +YEYTDFKDLSFDSY+ PTTDLP GHFRLLEVDHR+V+P+ESP
Sbjct: 89 IDEPDLTLKAIGHQWYWSYEYTDFKDLSFDSYMIPTTDLPNGHFRLLEVDHRVVVPMESP 148
Query: 362 IRVIITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPI 541
IRVIITA DVLHS AVP LGVKTDAIPGRLNQTSFI TRPGVFYGQCSEICGANHSY+PI
Sbjct: 149 IRVIITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFIATRPGVFYGQCSEICGANHSYMPI 208
Query: 542 VVESTPLKHFEA*SSLLSS 598
VVESTPL +FE SSLLS+
Sbjct: 209 VVESTPLPYFETWSSLLSA 227
>sp|O21400|COX2_STRCA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 229
Score = 277 bits (709), Expect = 1e-74
Identities = 141/199 (70%), Positives = 158/199 (79%)
Frame = +2
Query: 2 IVALAICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDE 181
+VALAICS +EKLSSNTVDAQEVE Y++DE
Sbjct: 29 MVALAICSLVLYLLALMLVEKLSSNTVDAQEVELIWTILPAIVLILLALPSLQILYMMDE 88
Query: 182 IDEPDLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESP 361
IDEPDLTLKAIGHQ Y +YEYTDFKDL+FDSY+ PT++LP GHFRLLEVDHR+V+P+ESP
Sbjct: 89 IDEPDLTLKAIGHQWYWSYEYTDFKDLTFDSYMIPTSELPPGHFRLLEVDHRVVVPMESP 148
Query: 362 IRVIITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPI 541
IRVIITA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PI
Sbjct: 149 IRVIITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPI 208
Query: 542 VVESTPLKHFEA*SSLLSS 598
VVESTPL +FE+ SSLLS+
Sbjct: 209 VVESTPLTYFESWSSLLST 227
>sp|O03893|COX2_RHEAM Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 199
Score = 276 bits (707), Expect = 2e-74
Identities = 140/195 (71%), Positives = 154/195 (78%)
Frame = +2
Query: 14 AICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEIDEP 193
AICS +EKLSSNTVDAQEVE Y++DEIDEP
Sbjct: 1 AICSLVLYLLSLMLMEKLSSNTVDAQEVELIWTILPAIVLILLALPSLQILYMMDEIDEP 60
Query: 194 DLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESPIRVI 373
DLTLKAIGHQ Y +YEYTDFKDL+FDSY+ PTT+LP GHFRLLEVDHR+V+P+ESPIRVI
Sbjct: 61 DLTLKAIGHQWYWSYEYTDFKDLAFDSYMIPTTELPSGHFRLLEVDHRVVVPMESPIRVI 120
Query: 374 ITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPIVVES 553
+TA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PIVVES
Sbjct: 121 VTAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVES 180
Query: 554 TPLKHFEA*SSLLSS 598
TPL HFE+ SSLLSS
Sbjct: 181 TPLAHFESWSSLLSS 195
>sp|O03889|COX2_APTAU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 199
Score = 276 bits (707), Expect = 2e-74
Identities = 141/195 (72%), Positives = 154/195 (78%)
Frame = +2
Query: 14 AICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEIDEP 193
AICS +EKLSSN+VDAQEVE Y++DEIDEP
Sbjct: 1 AICSLVLYLLTLMLMEKLSSNSVDAQEVELVWTILPAIVLILLALPSLQILYMMDEIDEP 60
Query: 194 DLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESPIRVI 373
DLTLKAIGHQ Y TYEYTDFKDLSFDSY+ PT++LPLGHFRLLEVDHR+V+P+ESPIRVI
Sbjct: 61 DLTLKAIGHQWYWTYEYTDFKDLSFDSYMIPTSELPLGHFRLLEVDHRVVVPMESPIRVI 120
Query: 374 ITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPIVVES 553
ITA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PIVVES
Sbjct: 121 ITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVES 180
Query: 554 TPLKHFEA*SSLLSS 598
TPL HFE SSLLS+
Sbjct: 181 TPLPHFENWSSLLST 195
>sp|O03891|COX2_DRONO Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 199
Score = 276 bits (706), Expect = 3e-74
Identities = 141/195 (72%), Positives = 153/195 (78%)
Frame = +2
Query: 14 AICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEIDEP 193
AICS +EKLSSNTVDAQEVE Y++DEIDEP
Sbjct: 1 AICSLVLYLLTLMLMEKLSSNTVDAQEVELIWTILPAIVLILLALPSLQILYMMDEIDEP 60
Query: 194 DLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESPIRVI 373
DLTLKAIGHQ Y TYEYTDFKDLSFDSY+ PT++LP GHFRLLEVDHR+V+P+ESPIRVI
Sbjct: 61 DLTLKAIGHQWYWTYEYTDFKDLSFDSYMVPTSELPSGHFRLLEVDHRVVVPMESPIRVI 120
Query: 374 ITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPIVVES 553
ITA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PIVVES
Sbjct: 121 ITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVES 180
Query: 554 TPLKHFEA*SSLLSS 598
TPL HFE SSLLS+
Sbjct: 181 TPLTHFENWSSLLSA 195
>sp|O03890|COX2_CASBE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 199
Score = 276 bits (705), Expect = 4e-74
Identities = 141/194 (72%), Positives = 152/194 (78%)
Frame = +2
Query: 14 AICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEIDEP 193
AICS +EKLSSNTVDAQEVE Y++DEIDEP
Sbjct: 1 AICSLVLYLLTLMLMEKLSSNTVDAQEVELIWTILPAIVLILLALPSLQILYMMDEIDEP 60
Query: 194 DLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESPIRVI 373
DLTLKAIGHQ Y TYEYTDFKDLSFDSY+ PT++LP GHFRLLEVDHR+V+P+ESPIRVI
Sbjct: 61 DLTLKAIGHQWYWTYEYTDFKDLSFDSYMVPTSELPSGHFRLLEVDHRVVVPMESPIRVI 120
Query: 374 ITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPIVVES 553
ITA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PIVVES
Sbjct: 121 ITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVES 180
Query: 554 TPLKHFEA*SSLLS 595
TPL HFE SSLLS
Sbjct: 181 TPLTHFENWSSLLS 194
>sp|O03892|COX2_NOTPE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 198
Score = 272 bits (696), Expect = 4e-73
Identities = 138/195 (70%), Positives = 153/195 (78%)
Frame = +2
Query: 14 AICSXXXXXXXXXXIEKLSSNTVDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEIDEP 193
AICS +EKLSSNTVDAQEVE Y++DEIDEP
Sbjct: 1 AICSLVLYLLALMLMEKLSSNTVDAQEVELIWTILPAIVLILLALPSLQILYMMDEIDEP 60
Query: 194 DLTLKAIGHQ*Y*TYEYTDFKDLSFDSYITPTTDLPLGHFRLLEVDHRIVIPIESPIRVI 373
DLTLKAIGHQ Y +YEYTDFKDLSFDSY+ PTT+LP GHFRLLEVDHR+V+P ESPIRVI
Sbjct: 61 DLTLKAIGHQWYWSYEYTDFKDLSFDSYMIPTTELPSGHFRLLEVDHRVVVPTESPIRVI 120
Query: 374 ITADDVLHS*AVPALGVKTDAIPGRLNQTSFITTRPGVFYGQCSEICGANHSYIPIVVES 553
+TA DVLHS AVP LGVKTDAIPGRLNQTSFITTRPG+FYGQCSEICGANHSY+PIVVES
Sbjct: 121 VTAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVES 180
Query: 554 TPLKHFEA*SSLLSS 598
TPL +FE+ S+LLS+
Sbjct: 181 TPLPYFESWSTLLST 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,448,316
Number of Sequences: 369166
Number of extensions: 1134595
Number of successful extensions: 2612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2537
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)