Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E20
(199 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8ZR68|SYC_SALTY Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.092
sp|Q8Z8P6|SYC_SALTI Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.092
sp|Q5E4F1|SYC_VIBF1 Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.092
sp|Q5ZVY1|SYC_LEGPH Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.12
sp|Q9KQZ9|SYC_VIBCH Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.12
sp|Q5WX29|SYC_LEGPL Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.12
sp|Q5X5P9|SYC_LEGPA Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.12
sp|Q7MLR5|SYC_VIBVY Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.12
sp|Q8D8R1|SYC_VIBVU Cysteinyl-tRNA synthetase (Cysteine--tR... 34 0.12
sp|Q87QJ9|SYC_VIBPA Cysteinyl-tRNA synthetase (Cysteine--tR... 33 0.16
>sp|Q8ZR68|SYC_SALTY Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 461
Score = 34.3 bits (77), Expect = 0.092
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD LK Y RYFLM H RS N + + S ++L
Sbjct: 264 REKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERL 319
>sp|Q8Z8P6|SYC_SALTI Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
sp|Q5PCE2|SYC_SALPA Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 461
Score = 34.3 bits (77), Expect = 0.092
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD LK Y RYFLM H RS N + + S ++L
Sbjct: 264 REKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERL 319
>sp|Q5E4F1|SYC_VIBF1 Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 461
Score = 34.3 bits (77), Expect = 0.092
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD L Y RYFLM H RS N + N+ S ++L
Sbjct: 266 REKMSKSLGNFFTIRDVLAHYDSETVRYFLMSGHYRSQLNYSEENLNQARASLERL 321
>sp|Q5ZVY1|SYC_LEGPH Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 456
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 160 NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKLIQIKL 5
NF+ D LK +H V RYFL+ H RS N ++++N N K I+L
Sbjct: 273 NFYTIADVLKEHHPEVIRYFLLSSHYRSPLN-----YSEENLLNAKKALIRL 319
>sp|Q9KQZ9|SYC_VIBCH Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 459
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD L Y RYFLM H RS N + N+ S ++L
Sbjct: 264 KEKMSKSLGNFFTIRDVLGHYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERL 319
>sp|Q5WX29|SYC_LEGPL Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 456
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 160 NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKLIQIKL 5
NF+ D LK +H V RYFL+ H RS N ++++N N K I+L
Sbjct: 273 NFYTIADVLKEHHPEVIRYFLLSSHYRSPLN-----YSEENLLNAKKALIRL 319
>sp|Q5X5P9|SYC_LEGPA Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 456
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 160 NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKLIQIKL 5
NF+ D LK +H V RYFL+ H RS N ++++N N K I+L
Sbjct: 273 NFYTIADVLKEHHPEVIRYFLLSSHYRSPLN-----YSEENLLNAKKALIRL 319
>sp|Q7MLR5|SYC_VIBVY Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 460
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD L Y RYFLM H RS N + N+ S ++L
Sbjct: 264 KEKMSKSLGNFFTIRDVLGHYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERL 319
>sp|Q8D8R1|SYC_VIBVU Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 460
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD L Y RYFLM H RS N + N+ S ++L
Sbjct: 264 KEKMSKSLGNFFTIRDVLGHYDAETVRYFLMSGHYRSQLNYSEENLNQARASLERL 319
>sp|Q87QJ9|SYC_VIBPA Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 460
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 187 QQHLRQTF*NFFGTRDELKPYH*IVSRYFLMKIHNRSYFNEINHSFNKKNTSNKKL 20
++ + ++ NFF RD L Y RYFLM H RS N + N+ S ++L
Sbjct: 264 REKMSKSLGNFFTIRDVLGHYDAETVRYFLMSGHYRSQLNYSEDNLNQARASLERL 319
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,817,858
Number of Sequences: 369166
Number of extensions: 245947
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)