Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E18
(560 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 183 2e-46
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 173 3e-43
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 172 7e-43
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 171 9e-43
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 171 1e-42
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 170 2e-42
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 170 3e-42
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 169 4e-42
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 168 1e-41
sp|P49690|RL23_ARATH 60S ribosomal protein L23 165 8e-41
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 183 bits (465), Expect = 2e-46
Identities = 85/104 (81%), Positives = 97/104 (93%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK
Sbjct: 28 CADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQ 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 88 FRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 173 bits (438), Expect = 3e-43
Identities = 83/104 (79%), Positives = 92/104 (88%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV VVIRQRK
Sbjct: 28 CADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKS 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 88 YRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 172 bits (435), Expect = 7e-43
Identities = 82/104 (78%), Positives = 92/104 (88%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELRKKV VVIRQRK
Sbjct: 28 CADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKS 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 88 YRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 171 bits (434), Expect = 9e-43
Identities = 82/104 (78%), Positives = 92/104 (88%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +VKKGKPELRKKV VVIRQRK
Sbjct: 28 CADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKS 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 88 YRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 171 bits (432), Expect = 1e-42
Identities = 77/104 (74%), Positives = 94/104 (90%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LRKK++ +V+RQRK
Sbjct: 27 CADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKA 86
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 87 WRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 170 bits (431), Expect = 2e-42
Identities = 80/104 (76%), Positives = 92/104 (88%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+++I+V G K RLNRLP+A VGDM V SVKKGKPELRKKVLQ VV+RQRK
Sbjct: 28 CADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQ 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 88 YRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 170 bits (430), Expect = 3e-42
Identities = 79/104 (75%), Positives = 92/104 (88%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+ VVIRQRK
Sbjct: 28 CADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKP 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 88 FRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 169 bits (428), Expect = 4e-42
Identities = 78/104 (75%), Positives = 92/104 (88%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+ VVIRQRK
Sbjct: 28 CADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKP 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 88 FRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 168 bits (425), Expect = 1e-41
Identities = 81/103 (78%), Positives = 89/103 (86%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKP LRKKV VVIRQRK
Sbjct: 28 CADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKS 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 59
Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 88 YRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|P49690|RL23_ARATH 60S ribosomal protein L23
Length = 140
Score = 165 bits (417), Expect = 8e-41
Identities = 76/104 (73%), Positives = 91/104 (87%)
Frame = -2
Query: 367 CADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKL 188
CADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKP+LRKKVL V++RQRK
Sbjct: 28 CADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKP 87
Query: 187 YKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 56
++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 88 WRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,555,013
Number of Sequences: 369166
Number of extensions: 1220286
Number of successful extensions: 3234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3163
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)