Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E04
(743 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 255 8e-68
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 255 8e-68
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 255 8e-68
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 253 4e-67
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 252 6e-67
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 251 1e-66
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 251 2e-66
sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 (L10E) 249 4e-66
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 249 7e-66
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 248 9e-66
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 255 bits (652), Expect = 8e-68
Identities = 128/234 (54%), Positives = 165/234 (70%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K Y K+ F ++ K FIV ADNV S+QMQN+R LR A +++GKNTMM+ I +
Sbjct: 10 KAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH+KGNVGFVFT GDL V+D +L K++APA+ A+AP+ V++P Q T
Sbjct: 70 ENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I PF YGL +
Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIV 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
Q+Y++GS +SP+ LDI +D+ F + +AAV L++ PT+AS PH IAN
Sbjct: 190 NQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIAN 243
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 255 bits (652), Expect = 8e-68
Identities = 132/234 (56%), Positives = 165/234 (70%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ + Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V SEA LL ML I PF YGL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLII 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+Y+NGS YSP+ LDITED + + F+E + +A+V L + PTLAS+PH I N
Sbjct: 190 QQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIIN 243
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 255 bits (652), Expect = 8e-68
Identities = 130/234 (55%), Positives = 163/234 (69%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K Y K+ F +Y K FIV ADNV S+QMQN+R LR +++GKNTMM+ I +
Sbjct: 10 KAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
N L KL PH+KGNVGFVFT GDL V+D +L K++APA+A A+AP+ V++P Q T
Sbjct: 70 ENNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I PF YGL I
Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAI 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
Q+Y++GS +SP+ LDI +D+ F +AAVSL + PT+AS PH IAN
Sbjct: 190 TQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIAN 243
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 253 bits (646), Expect = 4e-67
Identities = 128/234 (54%), Positives = 164/234 (70%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ Y K F+V ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+++NGS Y+P+ LDITE+ + + F+E + VA+V L + PT+ASVPH I N
Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVN 243
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 252 bits (644), Expect = 6e-67
Identities = 131/234 (55%), Positives = 162/234 (69%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
N L KL PH+KGNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+Y+NGS YSP+ LDITED + F+E + +A+V L + PT+ASVPH + N
Sbjct: 190 QQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVN 243
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 251 bits (641), Expect = 1e-66
Identities = 129/234 (55%), Positives = 163/234 (69%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH I N
Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIIN 243
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 251 bits (640), Expect = 2e-66
Identities = 130/234 (55%), Positives = 162/234 (69%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+++NGS YSP+ LDITE + F+E + VA+V L + PT+ASVPH I N
Sbjct: 190 QQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIIN 243
>sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 249 bits (637), Expect = 4e-66
Identities = 129/234 (55%), Positives = 162/234 (69%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL I
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII 189
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+++NGS Y+P+ LDITE + F+E + VA+V L + PT+ASVPH I N
Sbjct: 190 QQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIIN 243
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 249 bits (635), Expect = 7e-66
Identities = 128/234 (54%), Positives = 162/234 (69%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ Y K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 1 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 60
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 61 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 120
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKI 579
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD SEA LL ML I PF +GL I
Sbjct: 121 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLNMLNISPFSFGLVI 180
Query: 580 QQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
QQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH I N
Sbjct: 181 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIIN 234
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 248 bits (634), Expect = 9e-66
Identities = 130/237 (54%), Positives = 164/237 (69%), Gaps = 3/237 (1%)
Frame = +1
Query: 40 KINYAEKLKTKFSQYEKIFIVNADNVSSQQMQNVRKELRNSAEIVLGKNTMMKFVITKNK 219
K NY K+ + K FIV ADNV S+QMQ +R LR A +++GKNTMM+ I +
Sbjct: 10 KSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 220 ATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTT 399
NP L +L PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T
Sbjct: 70 ENNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 400 LGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQL---LQMLKIFPFQYG 570
LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA L L ML I PF YG
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYG 189
Query: 571 LKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIAN 741
L IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L + PTLAS+PH I N
Sbjct: 190 LIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIIN 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,596,528
Number of Sequences: 369166
Number of extensions: 1516551
Number of successful extensions: 4111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4074
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)