Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_D24
(724 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 316 5e-86
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 313 2e-85
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 311 1e-84
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 310 2e-84
sp|P08537|TBA_XENLA Tubulin alpha chain 310 3e-84
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 309 4e-84
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 309 6e-84
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 309 6e-84
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 308 7e-84
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 308 7e-84
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 316 bits (809), Expect = 5e-86
Identities = 142/196 (72%), Positives = 169/196 (86%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ+TVS++TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+AD E EEE
Sbjct: 432 YEEVGVDSADAEGEEE 447
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 313 bits (803), Expect = 2e-85
Identities = 140/196 (71%), Positives = 170/196 (86%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPLVT+AP++SAEKA HEQ++VS++TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KR++ FVDWCPTGFK+GINYQPPT VP GDLAK+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
+RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 SRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+AD E EEE
Sbjct: 432 YEEVGVDSADAEGEEE 447
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 311 bits (796), Expect = 1e-84
Identities = 139/196 (70%), Positives = 168/196 (85%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ+TV+++TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YMSCC+ YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+ + E EEE
Sbjct: 432 YEEVGVDSVEGEGEEE 447
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 310 bits (795), Expect = 2e-84
Identities = 139/196 (70%), Positives = 169/196 (86%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ+TV+++TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTA+AEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+AD E+E E
Sbjct: 432 YEEVGADSADGEDEGE 447
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 310 bits (793), Expect = 3e-84
Identities = 139/196 (70%), Positives = 168/196 (85%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ+TV+ +TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVADITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KR++ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+AD E+E E
Sbjct: 432 YEEVGADSADAEDEGE 447
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 309 bits (792), Expect = 4e-84
Identities = 139/196 (70%), Positives = 169/196 (86%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPLVT++PI+SAEKA HEQ++VS++TN+CFE NQMVKCDPR GK
Sbjct: 127 LTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGK 186
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CC+ YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 187 YMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 246
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 247 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 306
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+ D E+E E
Sbjct: 307 YEEVGTDSMDGEDEGE 322
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 309 bits (791), Expect = 6e-84
Identities = 138/196 (70%), Positives = 168/196 (85%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ++V+++TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+ + E EEE
Sbjct: 432 YEEVGVDSVEGEGEEE 447
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 309 bits (791), Expect = 6e-84
Identities = 138/196 (70%), Positives = 168/196 (85%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ++V+++TN+CFE NQMVKCDPR GK
Sbjct: 213 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGK 272
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 273 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 332
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 333 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 392
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+ + E EEE
Sbjct: 393 YEEVGVDSVEGEGEEE 408
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 308 bits (790), Expect = 7e-84
Identities = 138/196 (70%), Positives = 168/196 (85%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ++VS++TN+CFE NQMVKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CCL YRGD+ P +++ + IK KR++ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+ + E EEE
Sbjct: 432 YEEVGVDSVEGEGEEE 447
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 308 bits (790), Expect = 7e-84
Identities = 136/196 (69%), Positives = 168/196 (85%)
Frame = +2
Query: 2 ITELQTNLVPYPRIHFPLVTFAPIVSAEKANHEQMTVSQLTNSCFEHDNQMVKCDPRRGK 181
+TE QTNLVPYPRIHFPL T+AP++SAEKA HEQ++V+++TN+CFE NQ+VKCDPR GK
Sbjct: 252 LTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGK 311
Query: 182 YMSCCLFYRGDIDPTGISSTLNKIKLKRTVTFVDWCPTGFKIGINYQPPTVVPNGDLAKL 361
YM+CC+ YRGD+ P +++ + IK KRT+ FVDWCPTGFK+GINYQPPTVVP GDLAK+
Sbjct: 312 YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 362 TRAVVMVSNTTAIAEAWIRLDHKFDMLWSRRAFMHWYVGEGMDEMEFPMARETTAALEKD 541
RAV M+SNTTAIAEAW RLDHKFD+++++RAF+HWYVGEGM+E EF ARE AALEKD
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 542 YEQVGYDTADIENEEE 589
YE+VG D+ D E E+E
Sbjct: 432 YEEVGVDSVDAEGEDE 447
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,788,787
Number of Sequences: 369166
Number of extensions: 1557617
Number of successful extensions: 4014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3808
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)