Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_D14
(326 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 209 2e-54
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 209 2e-54
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 209 2e-54
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 209 2e-54
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 203 1e-52
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 203 1e-52
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 202 1e-52
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 202 1e-52
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 201 6e-52
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 199 2e-51
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 209 bits (532), Expect = 2e-54
Identities = 102/107 (95%), Positives = 106/107 (99%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 209 bits (532), Expect = 2e-54
Identities = 102/107 (95%), Positives = 106/107 (99%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 209 bits (532), Expect = 2e-54
Identities = 102/107 (95%), Positives = 106/107 (99%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 209 bits (531), Expect = 2e-54
Identities = 101/107 (94%), Positives = 106/107 (99%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EE
Sbjct: 37 KSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+AL+KGKKERPR+
Sbjct: 97 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
Length = 143
Score = 203 bits (516), Expect = 1e-52
Identities = 99/107 (92%), Positives = 105/107 (98%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEE
Sbjct: 37 KANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGRSGHAVGDIPGVRFKIVKVANVSL AL+ GKKERPR+
Sbjct: 97 NDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 203 bits (516), Expect = 1e-52
Identities = 100/107 (93%), Positives = 104/107 (97%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLNFIEE
Sbjct: 37 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLLALYK KKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 202 bits (515), Expect = 1e-52
Identities = 99/107 (92%), Positives = 104/107 (97%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE
Sbjct: 37 KANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+AL+KGKKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 202 bits (515), Expect = 1e-52
Identities = 99/107 (92%), Positives = 104/107 (97%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+IEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 201 bits (510), Expect = 6e-52
Identities = 98/107 (91%), Positives = 103/107 (96%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 199 bits (505), Expect = 2e-51
Identities = 98/107 (91%), Positives = 103/107 (96%)
Frame = +1
Query: 1 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 180
K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DG LN+IEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEE 96
Query: 181 NDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKKERPRA 321
NDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KKERPR+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,676,474
Number of Sequences: 369166
Number of extensions: 630947
Number of successful extensions: 2636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)