Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_D13
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 58 4e-08
sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another... 50 6e-06
sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another... 48 4e-05
sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 47 9e-05
sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 47 9e-05
sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 47 9e-05
sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 (Zinc finger-... 46 1e-04
sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 45 2e-04
sp|Q6AXX3|ZN659_RAT Zinc finger protein 659 45 2e-04
sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 (Zn-finger pr... 45 2e-04
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533
Length = 471
Score = 57.8 bits (138), Expect = 4e-08
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 8/180 (4%)
Frame = +1
Query: 181 QLSGTNKKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNE 360
QLS KK C+VCN+ +S + H GK H K + +++ + SN
Sbjct: 23 QLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPPPPAQASPSSNS 82
Query: 361 SKGKSFPVVTVPATIEQSQILYNPNLTCE---ACQVSCSKLDQLQKHLEGARHQKKMKFN 531
S G + T+PA + ++ P+L + + V S L + +K N
Sbjct: 83 STGSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVIN 142
Query: 532 KF--IELKNKKDPSVYCDICDLCMTEESM-KLHKTSGKH--KRKSTDKTTDEPAAKKTKN 696
+ + KK + C++C L +S + H KH K K+ D T ++P +K+
Sbjct: 143 HTFGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKD 202
Score = 39.3 bits (90), Expect = 0.014
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 211 LVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVT 390
L+ C +C V+ +S + E H G KH + E++N +G I KS+P
Sbjct: 284 LLYCSLCKVAVNSLSQLEAHNTGSKHKTMV--------EARNGAGPI------KSYPRPG 329
Query: 391 VPATIEQSQI---LYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKM 522
++ L N CE C V + QL++H+ RH+ ++
Sbjct: 330 SRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRV 376
Score = 37.4 bits (85), Expect = 0.053
Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 36/175 (20%)
Frame = +1
Query: 406 EQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKMKFNKFIELKN-------KKDP 564
E+ +IL++ CE C + + Q Q H G H+K++K +L + + P
Sbjct: 27 EKKKILFS---FCEVCNIQLNSAAQAQVHSNGKSHRKRVK-----QLSDGQPPPPAQASP 78
Query: 565 SVYCDICDLCMTEESMKLHKTSGKHKRKSTDK--------------------TTDEPAAK 684
S C T L +T + S D T +P K
Sbjct: 79 SSNSSTGSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQK 138
Query: 685 KTKN----VEIPTT---VENCGYCRINFKNTAEAVAHYQTQKHT--LNMINRSKN 822
N V IP V +C C++ F + ++A AHY+ KH + ++ +KN
Sbjct: 139 AVINHTFGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKN 193
>sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 50.4 bits (119), Expect = 6e-06
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%)
Frame = +1
Query: 52 NYRCVACNVFFSNFDEQKQHYF-TYHSRSVD--QGTFTAPMYSQYRQLSGTNKKGFLVKC 222
N+ C CN+ FS+ + HY H++S+ Q + Q R++ +K C
Sbjct: 133 NHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALQQNREMLDPDKF-----C 187
Query: 223 DVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVTVPAT 402
+C+ + + + H GK+H K K+ L + + +S+ GK +P
Sbjct: 188 SLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYP------- 240
Query: 403 IEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKK 519
C+ C++ + ++Q Q H+ G +H+ +
Sbjct: 241 -------------CKTCKIVLNSIEQYQAHVSGFKHKNQ 266
Score = 38.9 bits (89), Expect = 0.018
Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 11/203 (5%)
Frame = +1
Query: 217 KCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVTVP 396
+C VC S++ H + KKH + + L+ + G +
Sbjct: 74 QCKVCCAMLISESQKLAHYQSKKHANKVKRY-LAIHGMETIKGDVKRLDSD--------- 123
Query: 397 ATIEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKMKFNK-------FIELKNK 555
++S + N C C ++ S Q H G H K +K + + +
Sbjct: 124 ---QKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALQQNREM 180
Query: 556 KDPSVYCDICDLCMTEESMKLHKTSGKHKRKSTDKTTDEPAAKKTKNVEIPTTVENCGY- 732
DP +C +C + +M GK RK K + + + GY
Sbjct: 181 LDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYP 240
Query: 733 ---CRINFKNTAEAVAHYQTQKH 792
C+I + + AH KH
Sbjct: 241 CKTCKIVLNSIEQYQAHVSGFKH 263
>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 47.8 bits (112), Expect = 4e-05
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 3/159 (1%)
Frame = +1
Query: 52 NYRCVACNVFFSNFDEQKQHYF-TYHSRSVD--QGTFTAPMYSQYRQLSGTNKKGFLVKC 222
N C CN+ FS+ + HY H++++ Q + Q R++ +K C
Sbjct: 133 NQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKF-----C 187
Query: 223 DVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVTVPAT 402
+C+ + + + H GKKH K K+ L + + +++ GK +P
Sbjct: 188 SLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP------- 240
Query: 403 IEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKK 519
C+ C++ + ++Q Q H+ G +H+ +
Sbjct: 241 -------------CKTCKIVLNSIEQYQAHVSGFKHKNQ 266
Score = 40.8 bits (94), Expect = 0.005
Identities = 48/220 (21%), Positives = 67/220 (30%), Gaps = 28/220 (12%)
Frame = +1
Query: 217 KCDVCNVSCSSQTAYEFHMKGKKHTKSLNKI-------ALSSEESKNTSGIISNESKGKS 375
+C VC S++ H + KKH + + L E K S S+ SK K
Sbjct: 74 QCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDK- 132
Query: 376 FPVVTVPATIEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKMKFNK------- 534
N C C ++ S Q H G H K +K +
Sbjct: 133 -------------------NQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEA 173
Query: 535 FIELKNKKDPSVYCDICDLCMTEESMKLHKTSGKHKRKSTDK--------------TTDE 672
+ + DP +C +C + M GK RK K TD
Sbjct: 174 LHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDF 233
Query: 673 PAAKKTKNVEIPTTVENCGYCRINFKNTAEAVAHYQTQKH 792
PA K C C+I + + AH KH
Sbjct: 234 PAGKGYP----------CKTCKIVLNSIEQYQAHVSGFKH 263
Score = 30.0 bits (66), Expect = 8.4
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Frame = +1
Query: 61 CVACNVFFSNFDEQKQHYFTYHSRSVDQGTFTAPMYSQYRQLSGTN---KKGFLVKCDVC 231
C C+ F++ +QHY R + Y + + T+ KG+ C C
Sbjct: 187 CSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGY--PCKTC 244
Query: 232 NVSCSSQTAYEFHMKGKKHTKSLNKIALSS 321
+ +S Y+ H+ G KH K SS
Sbjct: 245 KIVLNSIEQYQAHVSGFKHKNQSPKTVASS 274
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3703
Score = 46.6 bits (109), Expect = 9e-05
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)
Frame = +1
Query: 55 YRCVACNVFFS-NFDEQKQHYFTYHSRSVDQGTFTAPMYSQYRQLSGTNKKGFLVKCDVC 231
++C CN F + N D H S S D+ + A M Y+ C +C
Sbjct: 945 FQCAVCNKFTTDNLDMLGLHMNVERSLSEDE--WKAVMGDSYQ-------------CKLC 989
Query: 232 NVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVTVPATIEQ 411
+ + ++ H K KH + +A E K +NE + K +
Sbjct: 990 RYNTQLKANFQLHCKTDKHVQKYQLVAHIKEGGK------ANEWRLKCVAIG-------- 1035
Query: 412 SQILYNP-NLTCEACQVSCSKLDQLQKHLEGARHQKKMKFNKFIELKNKKDPSVYCDI-C 585
NP +L C AC + L++L+ H +RH+ +K K ++ C C
Sbjct: 1036 -----NPVHLKCNACDYYTNSLEKLRLHTVNSRHEASLKLYKHLQQHESGVEGESCYYHC 1090
Query: 586 DLCMTEESMKL----HKTSGKHKRKST 654
LC KL H S KH+R +
Sbjct: 1091 VLCNYSTKAKLNLIQHVRSMKHQRSES 1117
Score = 37.0 bits (84), Expect = 0.069
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +1
Query: 55 YRCVACNVFFSNFDEQKQHYFTYHSRSVDQGTFTAPMYSQYRQLSGTNKKGFLVKCDVCN 234
Y+C C F+ + HY + + Q S + K F KC+ CN
Sbjct: 1545 YKCTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPF--KCNTCN 1602
Query: 235 VSCSSQTAYEFHMKGKKH-TKSLNKIALSSEESKNTSGIISNESKGKSFP 381
V+ S + E HM+ H TK+ ++ S N +G S+ S S P
Sbjct: 1603 VAYSQSSTLEIHMRSVLHQTKARAAKLEAASGSSNGTGNSSSISLSSSTP 1652
Score = 36.2 bits (82), Expect = 0.12
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Frame = +1
Query: 217 KCDVCNVSCSSQTAYEFHMKGKKHTKSLNKI------------ALSSEESKNTSGIISNE 360
+C+VCN S +++ HM+ KH ++ + A ++ + + +N
Sbjct: 727 RCEVCNYSTTTKGNLSIHMQSDKHLNNMQNLQNGGGEQVFIHTAGAAAAAAAAAAAAANI 786
Query: 361 SKGKSFPVVTVPATIEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKM 522
S P T P T P CE C + L+ H+ +H M
Sbjct: 787 SSSCGAPSPTKPKT--------KPTWRCEVCDYETNVARNLRIHMTSEKHMHNM 832
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3726
Score = 46.6 bits (109), Expect = 9e-05
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)
Frame = +1
Query: 55 YRCVACNVFFS-NFDEQKQHYFTYHSRSVDQGTFTAPMYSQYRQLSGTNKKGFLVKCDVC 231
++C CN F + N D H S S D+ + A M Y+ C +C
Sbjct: 946 FQCAVCNKFTTDNLDMLGLHMNVERSLSEDE--WKAVMGDSYQ-------------CKLC 990
Query: 232 NVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVTVPATIEQ 411
+ + ++ H K KH + +A E K +NE + K +
Sbjct: 991 RYNTQLKANFQLHCKTDKHVQKYQLVAHIKEGGK------ANEWRLKCVAIG-------- 1036
Query: 412 SQILYNP-NLTCEACQVSCSKLDQLQKHLEGARHQKKMKFNKFIELKNKKDPSVYCDI-C 585
NP +L C AC + L++L+ H +RH+ +K K ++ C C
Sbjct: 1037 -----NPVHLKCNACDYYTNSLEKLRLHTVNSRHEASLKLYKHLQQHESGVEGESCYYHC 1091
Query: 586 DLCMTEESMKL----HKTSGKHKRKST 654
LC KL H S KH+R +
Sbjct: 1092 VLCNYSTKAKLNLIQHVRSMKHQRSES 1118
Score = 34.7 bits (78), Expect = 0.34
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Frame = +1
Query: 217 KCDVCNVSCSSQTAYEFHMKGKKHTKSLNKI------------ALSSEESKNTSGIISNE 360
+C+VCN S +++ HM+ KH ++ + A ++ + + +N
Sbjct: 728 RCEVCNYSTTTKGNLSIHMQSDKHLNNMQNLQNGGGEQVFSHSAGAAAAAAAAAAAAANI 787
Query: 361 SKGKSFPVVTVPATIEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKM 522
P T P T P CE C + L+ H+ +H M
Sbjct: 788 GSSWGAPSPTKPKT--------KPTWRCEVCDYETNVARNLRIHMTSEKHMHNM 833
Score = 34.3 bits (77), Expect = 0.45
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Frame = +1
Query: 55 YRCVACNVFFSNFDEQKQHYFTYHSRSVDQGTFTAPMYSQYRQLSGTNKKGFLVKCDVCN 234
Y+C C F+ + HY + + Q S + K F KC+ CN
Sbjct: 1555 YKCTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPF--KCNTCN 1612
Query: 235 VSCSSQTAYEFHMKGKKH-TKS-LNKIALSSEESKNT--SGIISNESKGKS 375
V+ S + E HM+ H TK+ K+ +S S T SG +S S S
Sbjct: 1613 VAYSQSSTLEIHMRSVLHQTKARAAKLEAASGNSNGTGNSGGVSLSSSTPS 1663
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533
Length = 492
Score = 46.6 bits (109), Expect = 9e-05
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 13/186 (6%)
Frame = +1
Query: 181 QLSGTNKKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKI-------ALSSEESKNT 339
QL KK CDVCN+ S + H GK H K + ++ A +S +
Sbjct: 2 QLQQEKKKLLYSLCDVCNIQLHSAAQAQVHYNGKSHLKRVKQLNNGEVPKASASLAPTSL 61
Query: 340 SGIISNESKGKSFPVVTVPATIEQSQILYNPNLTCEACQV----SCSKLDQLQKHLEGAR 507
+ S+ S+G S T+P + ++ L + S S +
Sbjct: 62 QSLSSSSSQGSSCHSNTLPTLVRTPSLMMQSGLDMKPFMTFPVESSSPVGLFPNFNTMDP 121
Query: 508 HQKKMKFNKF-IELKNKKDPSVYCDICDLCMTEESM-KLHKTSGKHKRKSTDKTTDEPAA 681
QK + + F + + KK + C+IC L +S + H KH +K K + P
Sbjct: 122 VQKAVINHTFGVSIPPKKKQVISCNICQLRFNSDSQAEAHYKGSKHAKKL--KAQESPKN 179
Query: 682 KKTKNV 699
K+ V
Sbjct: 180 KQKSAV 185
Score = 43.5 bits (101), Expect = 7e-04
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Frame = +1
Query: 211 LVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVT 390
L+ C +C V+ +S + E H G KH L E++N +G I K++P
Sbjct: 305 LLYCSLCKVAVNSLSQLEAHNTGSKHKTML--------EARNGAGPI------KAYPRPG 350
Query: 391 VPATIEQSQI-----LYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKM 522
++ +Q+ L N CE C V + QL++H+ RH+ ++
Sbjct: 351 SKLKVQATQLNKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRV 399
>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 (Zinc finger-like protein 9)
Length = 477
Score = 45.8 bits (107), Expect = 1e-04
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Frame = +1
Query: 49 SNYRCVACNVFFSNFDEQKQHYFT----YHSRS--VDQGTFTAPMYSQ----YRQLSGTN 198
+ Y C+ C V F + D Q+ HY T Y+ R TA + + R ++
Sbjct: 2 ATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEE 61
Query: 199 KKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESK 333
KG C VC+ +S AYE H+K ++H + L K A+ + K
Sbjct: 62 SKGSATYCTVCSKKFASFNAYENHLKSRRHVE-LEKKAVQAVNRK 105
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533
Length = 482
Score = 45.4 bits (106), Expect = 2e-04
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Frame = +1
Query: 181 QLSGTNKKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGII--- 351
Q S KK C+VCN+ +S + H GK H K + +++ + G +
Sbjct: 23 QFSKEKKKILFSFCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLS-DGQPPPPVQGSVPLL 81
Query: 352 ----------SNESKGKSFPVVTVPATIEQSQILYNPNLTCE---ACQVSCSKLDQLQKH 492
N S G + T+PA + ++ P+L + + V S L +
Sbjct: 82 AGPCPCPGPGPNTSTGSACHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPN 141
Query: 493 LEGARHQKKMKFNKF--IELKNKKDPSVYCDICDLCMTEESM-KLHKTSGKH--KRKSTD 657
+K N + + KK + C++C L +S + H KH K K+ +
Sbjct: 142 FNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALE 201
Query: 658 KTTDEPAAKKTKN 696
T ++P +K+
Sbjct: 202 ATKNKPKMVPSKD 214
Score = 39.3 bits (90), Expect = 0.014
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 211 LVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVT 390
L+ C +C V+ +S + E H G KH + E++N +G I KS+P
Sbjct: 296 LLYCSLCKVAVNSLSQLEAHNTGSKHKTMV--------EARNGAGPI------KSYPRPG 341
Query: 391 VPATIEQSQI---LYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKM 522
++ L N CE C V + QL++H+ RH+ ++
Sbjct: 342 SRLKVQNGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRV 388
Score = 38.9 bits (89), Expect = 0.018
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 199 KKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSF 378
KK ++ C+VC + +S + E H KG KH K + + E +KN ++ ++ K+
Sbjct: 164 KKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKAL----EATKNKPKMVPSKDSAKAN 219
Query: 379 PVVTV-PATIEQS 414
P ++ P T + S
Sbjct: 220 PSCSIRPGTGDSS 232
>sp|Q6AXX3|ZN659_RAT Zinc finger protein 659
Length = 395
Score = 45.4 bits (106), Expect = 2e-04
Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 21/220 (9%)
Frame = +1
Query: 196 NKKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKS 375
++K ++ C++C + +S + H KG KH K L AL S ++K S + +K
Sbjct: 74 HRKKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLK--ALESMKNKQKSVTAKDSAKTTF 131
Query: 376 FPVVTVPATIEQ--------SQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQKKMKFN 531
+ T P T +Q++ ++ +V+ +K L A
Sbjct: 132 TSITTNPITTSSDKTESTAGTQVIARSADMRKSSEVTTELTSNAEKSLTAAVAAGNNSSP 191
Query: 532 KFIELKNKKDPSVYCDICDLCMTEES-MKLHKTSGKHK-----RKSTDKTTDEP-AAKKT 690
+ K +YC +C + + S ++ H + KHK R + P A K
Sbjct: 192 PTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGMKG 251
Query: 691 K------NVEIPTTVENCGYCRINFKNTAEAVAHYQTQKH 792
K N + +C C ++ + + H +++H
Sbjct: 252 KGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRH 291
Score = 43.5 bits (101), Expect = 7e-04
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Frame = +1
Query: 211 LVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESKNTSGIISNESKGKSFPVVT 390
L+ C +C V+ +S + E H G KH L E++N SG I K+FP
Sbjct: 203 LLYCSLCKVAVNSASQLEAHNSGTKHKTML--------EARNGSGTI------KAFPRAG 248
Query: 391 VPA---TIEQSQILYNPNLTCEACQVSCSKLDQLQKHLEGARHQ-------KKMKFNKFI 540
+ + + L N CE C V + QL++H+ RH+ K K++ +
Sbjct: 249 MKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRASGKPPKPKYSPYN 308
Query: 541 ELKNKKDP 564
+L+ P
Sbjct: 309 KLQKAAHP 316
>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 (Zn-finger protein C47)
Length = 405
Score = 45.4 bits (106), Expect = 2e-04
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Frame = +1
Query: 49 SNYRCVACNVFFSNFDEQKQHYFT-YHSRSV-----DQGTFTAPMYSQ----YRQLSGTN 198
+ Y C+ C V F + D Q+ HY T +H ++ D TA + + R ++
Sbjct: 2 ATYTCITCRVAFKDADIQRAHYKTDWHRYNLKRKVADMPPVTAENFQERVLAQRAVAEER 61
Query: 199 KKGFLVKCDVCNVSCSSQTAYEFHMKGKKHTKSLNKIALSSEESK 333
K C VC+ S+ AYE H+K KKH + L K A+ + K
Sbjct: 62 DKVTATYCTVCSKRFSTFNAYENHLKSKKHLE-LEKKAVQAVSKK 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,066,228
Number of Sequences: 369166
Number of extensions: 1683685
Number of successful extensions: 5789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5682
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)