Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_D07
(713 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17304|ACTM_APLCA Actin, muscle 397 e-110
sp|Q7ZVF9|ACTB2_BRARE Actin, cytoplasmic 2 (Beta-actin-2) 397 e-110
sp|P91754|ACT_LUMRU Actin 397 e-110
sp|P92182|ACT1_LUMTE Actin-1 397 e-110
sp|Q26065|ACT_PLAMG Actin, adductor muscle 397 e-110
sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5 396 e-110
sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin) >gi|... 396 e-110
sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin) >gi... 396 e-110
sp|P15475|ACTB_XENBO Actin, cytoplasmic 1 (Beta actin) 396 e-110
sp|Q91ZK5|ACTB_SIGHI Actin, cytoplasmic 1 (Beta-actin) 396 e-110
>sp|P17304|ACTM_APLCA Actin, muscle
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 203/233 (87%), Positives = 213/233 (91%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV PEEHPVLLTEAPL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVPPEEHPVLLTEAPL 111
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA
Sbjct: 112 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 171
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYL KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+MATA
Sbjct: 172 LPHAILRLDLAGRDLTDYLSKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 231
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI ++ F I+LGM+ ++ ++SIM
Sbjct: 232 ASSSSLEKSYELPDGQVITIGNERFRCPESLFQPILLGMESAGIHETTYNSIM 284
>sp|Q7ZVF9|ACTB2_BRARE Actin, cytoplasmic 2 (Beta-actin-2)
Length = 375
Score = 397 bits (1019), Expect = e-110
Identities = 203/235 (86%), Positives = 211/235 (89%), Gaps = 3/235 (1%)
Frame = +1
Query: 4 RHEGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 183
R + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA
Sbjct: 49 RKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 108
Query: 184 PLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEG 363
PLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEG
Sbjct: 109 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEG 168
Query: 364 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMA 543
YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+M
Sbjct: 169 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMG 228
Query: 544 TAASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
TAASSSSLEKSYELPDGQVITI + F LGM+ ++ F+SIM
Sbjct: 229 TAASSSSLEKSYELPDGQVITIGNEGFRCPEALFQPSFLGMESCGIHETTFNSIM 283
>sp|P91754|ACT_LUMRU Actin
Length = 372
Score = 397 bits (1019), Expect = e-110
Identities = 202/233 (86%), Positives = 212/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 48 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 107
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA
Sbjct: 108 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 167
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF+Q+M TA
Sbjct: 168 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFDQEMGTA 227
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI ++ F LGM+ ++ F+SIM
Sbjct: 228 ASSSSLEKSYELPDGQVITIGNERFRCPESMFQPAFLGMESAGIHETTFNSIM 280
>sp|P92182|ACT1_LUMTE Actin-1
Length = 376
Score = 397 bits (1019), Expect = e-110
Identities = 202/233 (86%), Positives = 212/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA
Sbjct: 112 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 171
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF+Q+M TA
Sbjct: 172 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFDQEMGTA 231
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI ++ F LGM+ ++ F+SIM
Sbjct: 232 ASSSSLEKSYELPDGQVITIGNERFRCPESMFQPAFLGMESAGIHETTFNSIM 284
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 397 bits (1019), Expect = e-110
Identities = 203/233 (87%), Positives = 212/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA
Sbjct: 112 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 171
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFE +MATA
Sbjct: 172 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATA 231
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI ++ F LGM+ ++ ++SIM
Sbjct: 232 ASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIM 284
>sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5
Length = 376
Score = 396 bits (1018), Expect = e-110
Identities = 203/233 (87%), Positives = 211/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYA
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 171
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+MATA
Sbjct: 172 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 231
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI + F LGM+ ++ F+SIM
Sbjct: 232 ASSSSLEKSYELPDGQVITIGNERFRCPEAIFQPSFLGMESCGIHETTFNSIM 284
>sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin)
sp|P60713|ACTB_SHEEP Actin, cytoplasmic 1 (Beta-actin)
sp|Q5R1X3|ACTB_PANTR Actin, cytoplasmic 1 (Beta-actin)
sp|P60710|ACTB_MOUSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q711N9|ACTB_MESAU Actin, cytoplasmic 1 (Beta-actin)
sp|P60708|ACTB_HORSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q76N69|ACTB_CERAE Actin, cytoplasmic 1 (Beta-actin)
sp|Q71FK5|ACTB_CAVPO Actin, cytoplasmic 1 (Beta-actin)
sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 (Beta-actin)
sp|P60711|ACTB_RAT Actin, cytoplasmic 1 (Beta-actin)
sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin)
sp|P60706|ACTB_CHICK Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 396 bits (1018), Expect = e-110
Identities = 203/233 (87%), Positives = 211/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYA
Sbjct: 111 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 170
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+MATA
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 230
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI + F LGM+ ++ F+SIM
Sbjct: 231 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIM 283
>sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin)
sp|P63259|ACTG_RAT Actin, cytoplasmic 2 (Gamma-actin)
sp|P63257|ACTG_TRIVU Actin, cytoplasmic 2 (Gamma-actin)
sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 (Gamma-actin)
sp|P63258|ACTG_BOVIN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 396 bits (1018), Expect = e-110
Identities = 203/233 (87%), Positives = 211/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYA
Sbjct: 111 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 170
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+MATA
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 230
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI + F LGM+ ++ F+SIM
Sbjct: 231 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIM 283
>sp|P15475|ACTB_XENBO Actin, cytoplasmic 1 (Beta actin)
Length = 376
Score = 396 bits (1018), Expect = e-110
Identities = 203/233 (87%), Positives = 211/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYA
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 171
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+MATA
Sbjct: 172 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 231
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI + F LGM+ ++ F+SIM
Sbjct: 232 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIM 284
>sp|Q91ZK5|ACTB_SIGHI Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 396 bits (1018), Expect = e-110
Identities = 203/233 (87%), Positives = 211/233 (90%), Gaps = 3/233 (1%)
Frame = +1
Query: 10 EGYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 189
+ YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
Query: 190 NPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 369
NPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYA
Sbjct: 111 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 170
Query: 370 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQDMATA 549
LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ+MATA
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 230
Query: 550 ASSSSLEKSYELPDGQVITIVTND-SVVQNHFSTIILGMDL--LYHEHFHSIM 699
ASSSSLEKSYELPDGQVITI + F LGM+ ++ F+SIM
Sbjct: 231 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIM 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,596,593
Number of Sequences: 369166
Number of extensions: 1749125
Number of successful extensions: 5745
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5613
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)