Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_C21
(703 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 395 e-110
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 392 e-109
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 392 e-109
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 392 e-109
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 392 e-109
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 392 e-109
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 392 e-109
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 390 e-108
sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha) 388 e-108
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 383 e-106
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 395 bits (1016), Expect = e-110
Identities = 192/227 (84%), Positives = 210/227 (92%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGT
Sbjct: 61 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV SY+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEKMQKSKKNS 684
+GY P AVAFVPISGW+GDNM+E ST MP +KG ++ K K+ S
Sbjct: 181 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKS 227
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 392 bits (1008), Expect = e-109
Identities = 187/219 (85%), Positives = 205/219 (93%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEK 660
+GY PD VAFVPISGWNGDNM+E S+NMP +KG ++ K
Sbjct: 181 IGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRK 219
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 392 bits (1007), Expect = e-109
Identities = 187/219 (85%), Positives = 204/219 (93%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEK 660
+GY PD VAFVPISGWNGDNM+E S NMP +KG ++ K
Sbjct: 181 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRK 219
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 392 bits (1007), Expect = e-109
Identities = 187/219 (85%), Positives = 204/219 (93%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEK 660
+GY PD VAFVPISGWNGDNM+E S NMP +KG ++ K
Sbjct: 181 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRK 219
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 392 bits (1007), Expect = e-109
Identities = 187/219 (85%), Positives = 204/219 (93%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEK 660
+GY PD VAFVPISGWNGDNM+E S NMP +KG ++ K
Sbjct: 181 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRK 219
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 392 bits (1007), Expect = e-109
Identities = 191/233 (81%), Positives = 212/233 (90%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDS+EPP+S+ R+EEIKKEV SY+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKKEVSSYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEKMQKSKKNSRGSVPI 702
+GY P AVAFVPISGW+GDNM+E STNMP +KG K+++ + N+ G I
Sbjct: 181 IGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKG----WKVERKEGNADGKTLI 229
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 392 bits (1006), Expect = e-109
Identities = 186/219 (84%), Positives = 204/219 (93%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDI+LWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLAYTLGVKQ+IVG+NKMDSTEPP+S KR+EEI KEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVSTYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEK 660
+GY PD VAFVPISGWNGDNM+E S NMP +KG ++ K
Sbjct: 181 IGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 390 bits (1002), Expect = e-108
Identities = 189/223 (84%), Positives = 204/223 (91%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAG
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPPFS+ RFEEIKKEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEKMQKS 672
+GY P AVAFVPISGW+GDNM+E S +P YKG + K K+
Sbjct: 181 IGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERKEGKA 223
>sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 388 bits (996), Expect = e-108
Identities = 187/224 (83%), Positives = 207/224 (92%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADCAVL+VAAGT
Sbjct: 61 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ R+EEIKKEV SY+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEKMQKSK 675
+GY P +VAFVPISGW+GDNM+E S MP +KG + K K++
Sbjct: 181 IGYNPASVAFVPISGWHGDNMLEPSEKMPWFKGWSVERKEGKAE 224
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 383 bits (984), Expect = e-106
Identities = 183/219 (83%), Positives = 200/219 (91%)
Frame = +1
Query: 4 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
M +K HINIVVIGHVDSGKST+TGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60
Query: 184 DKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADCAVLVVAAGT 363
DKLKAERERGITIDI+LWKFET KFY+T+IDAPGHRDFIKNMITGTSQADCAVL+VA G
Sbjct: 61 DKLKAERERGITIDISLWKFETGKFYITIIDAPGHRDFIKNMITGTSQADCAVLIVAGGV 120
Query: 364 GEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGSYLKK 543
GEFEAGISKNGQTREHALLA+TLGVKQ+I+GVNKMDSTEPPFS KRFEEI KEV +Y+KK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEPPFSQKRFEEITKEVSAYIKK 180
Query: 544 VGYQPDAVAFVPISGWNGDNMIEESTNMP*YKGERLLEK 660
+GY P V FVPISGW+GDNM+E STNMP +KG ++ K
Sbjct: 181 IGYNPATVPFVPISGWHGDNMLEASTNMPWFKGWKIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,609,481
Number of Sequences: 369166
Number of extensions: 1509925
Number of successful extensions: 7231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5990
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)