Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_C15
(361 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52758|UK14_HUMAN Ribonuclease UK114 (14.5 kDa translati... 133 1e-31
sp|P80601|UK14_CAPHI Ribonuclease UK114 (14.5 kDa translati... 131 5e-31
sp|P52759|UK14_RAT Ribonuclease UK114 (14.5 kDa translation... 127 1e-29
sp|P52760|UK14_MOUSE Ribonuclease UK114 (Heat-responsive pr... 125 3e-29
sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 ... 108 3e-24
sp|Q9ZKQ6|Y944_HELPJ Hypothetical UPF0076 protein JHP0879 105 2e-23
sp|O25598|Y944_HELPY Hypothetical UPF0076 protein HP0944 103 1e-22
sp|P52761|Y709_SYNY3 Hypothetical UPF0076 protein slr0709 94 1e-19
sp|O34133|ALDR_LACLA Putative regulator aldR 94 1e-19
sp|O58584|Y854_PYRHO Hypothetical UPF0076 protein PH0854 92 4e-19
>sp|P52758|UK14_HUMAN Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(p14.5) (UK114 antigen homolog)
Length = 137
Score = 133 bits (334), Expect = 1e-31
Identities = 63/102 (61%), Positives = 79/102 (77%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
YISGQ+G+DP+S +LV + + KQAL NMG +L AA C+F+NVVKTTVLLADINDF
Sbjct: 32 YISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNT 91
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDLT 307
+N IY +FK FPARAAYQVA LP +++EIEA+A+ G LT
Sbjct: 92 VNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLT 133
>sp|P80601|UK14_CAPHI Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(UK114 antigen) (14.3 kDa perchloric acid soluble
protein)
Length = 137
Score = 131 bits (329), Expect = 5e-31
Identities = 64/102 (62%), Positives = 79/102 (77%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
YISGQ+G+DP S +LV + + KQALTN+G +L AA C+F+NVVK TVLLADINDF+A
Sbjct: 32 YISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSA 91
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDLT 307
+N +Y +F+ FPARAAYQVA LP +VEIEAIAV G LT
Sbjct: 92 VNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIAVQGPLT 133
>sp|P52759|UK14_RAT Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(Perchloric acid soluble protein)
Length = 137
Score = 127 bits (318), Expect = 1e-29
Identities = 61/102 (59%), Positives = 78/102 (76%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
Y+SGQ+G+DP+S +LV + + KQAL N+G +L AA C+F+NVVKTTVLLADINDF
Sbjct: 32 YVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGT 91
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDLT 307
+N IY T+F+ PARAAYQVA LP +++EIEAIAV G T
Sbjct: 92 VNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQGPFT 133
>sp|P52760|UK14_MOUSE Ribonuclease UK114 (Heat-responsive protein 12)
Length = 135
Score = 125 bits (314), Expect = 3e-29
Identities = 62/99 (62%), Positives = 77/99 (77%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
YISGQVG+DP+S +LV + + KQAL N+G +L AA C+F+NVVKTTVLLAD+NDF
Sbjct: 32 YISGQVGLDPSSGQLVPGGVVEEAKQALKNLGEILKAAGCDFNNVVKTTVLLADMNDFGT 91
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVG 298
+N IY T+F+ PARAAYQVA LP ++VEIEAIAV G
Sbjct: 92 VNEIYKTYFQGSLPARAAYQVAALPRGSRVEIEAIAVQG 130
>sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 in chromosome III
Length = 171
Score = 108 bits (271), Expect = 3e-24
Identities = 54/101 (53%), Positives = 72/101 (71%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
Y+SG +G+DP + L +E QT Q+L N+G VL AA ++ NVVKTTVLL +I DF A
Sbjct: 67 YLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAA 125
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVVGDL 304
+N +Y +FK P+PARAAYQVA LP VEIEA+A+ G++
Sbjct: 126 VNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVAIAGEI 166
>sp|Q9ZKQ6|Y944_HELPJ Hypothetical UPF0076 protein JHP0879
Length = 125
Score = 105 bits (263), Expect = 2e-23
Identities = 48/97 (49%), Positives = 71/97 (73%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
++SGQ+G+D ++ + G DI SQT Q++ N+ +L A +VVKTT+LL ++DF
Sbjct: 28 FVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAV 87
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAV 292
+NGIY ++FK+P+PARA +QVA+LP A VEIEAIA+
Sbjct: 88 VNGIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAI 124
>sp|O25598|Y944_HELPY Hypothetical UPF0076 protein HP0944
Length = 125
Score = 103 bits (257), Expect = 1e-22
Identities = 47/97 (48%), Positives = 70/97 (72%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
++SGQ+G+D ++ + G DI SQT Q++ N+ +L A +VVKTT+LL ++DF
Sbjct: 28 FVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAV 87
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAV 292
+NGIY ++F +P+PARA +QVA+LP A VEIEAIA+
Sbjct: 88 VNGIYGSYFTEPYPARATFQVAKLPKDALVEIEAIAI 124
>sp|P52761|Y709_SYNY3 Hypothetical UPF0076 protein slr0709
Length = 130
Score = 94.0 bits (232), Expect = 1e-19
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGD-DIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFT 178
+ +GQ+ +DP + ++G+ ++E Q KQ LTN+G VL A C + NVVKTTV L D+NDF
Sbjct: 29 FTAGQIALDPQTMTIMGEGNVEVQAKQVLTNLGAVLQEAGCGWENVVKTTVFLKDMNDFA 88
Query: 179 AMNGIYSTFFKQ-PFPARAAYQVARLPLSAKVEIEAIAVV 295
A+N IY +F + PAR+ +VARLP VEI+ +AV+
Sbjct: 89 AVNAIYGQYFDEATAPARSCVEVARLPKDVLVEIDCVAVL 128
>sp|O34133|ALDR_LACLA Putative regulator aldR
Length = 126
Score = 94.0 bits (232), Expect = 1e-19
Identities = 46/98 (46%), Positives = 66/98 (67%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
Y SGQ+ ++P + ++VGD IE+QT+Q + N+ +L A+ +F V+KTT L +I DF+
Sbjct: 27 YASGQIPLNPLNGEIVGDSIETQTEQVMKNISAILKEAHSDFDLVIKTTCFLKNIEDFSR 86
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIAVV 295
N IYS FF + FPAR+A VA LP + +EIE IA V
Sbjct: 87 FNAIYSKFFDKEFPARSAVGVAGLPKNVLIEIEVIAEV 124
>sp|O58584|Y854_PYRHO Hypothetical UPF0076 protein PH0854
Length = 126
Score = 92.0 bits (227), Expect = 4e-19
Identities = 43/96 (44%), Positives = 66/96 (68%)
Frame = +2
Query: 2 YISGQVGVDPTSNKLVGDDIESQTKQALTNMGNVLAAANCNFSNVVKTTVLLADINDFTA 181
+I+GQ+ +DP + ++V DI+ QT+Q L N+ +L AA + ++V+K TV L D+NDF
Sbjct: 28 FIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAK 87
Query: 182 MNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEAIA 289
MN +Y+ +F + PAR A +V+RLP +EIEAIA
Sbjct: 88 MNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIA 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,702,658
Number of Sequences: 369166
Number of extensions: 645146
Number of successful extensions: 1524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)