Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_C01
(337 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35034|TRYP_PLEPL Trypsin precursor 65 5e-11
sp|P32038|CFAD_RAT Complement factor D precursor (C3 conver... 60 1e-09
sp|P32822|TRYB_RAT Trypsin V-B precursor 60 1e-09
sp|P32821|TRYA_RAT Trypsin V-A precursor 60 1e-09
sp|P03953|CFAD_MOUSE Complement factor D precursor (C3 conv... 60 2e-09
sp|P51779|CFAD_PIG Complement factor D precursor (C3 conver... 60 2e-09
sp|P47796|CTRA_GADMO Chymotrypsin A precursor 58 6e-09
sp|P40313|CTRL_HUMAN Chymotrypsin-like protease CTRL-1 prec... 57 1e-08
sp|P80646|CTRB_GADMO Chymotrypsin B [Contains: Chymotrypsin... 57 1e-08
sp|Q29463|TRY2_BOVIN Anionic trypsin precursor 57 1e-08
>sp|P35034|TRYP_PLEPL Trypsin precursor
Length = 250
Score = 65.1 bits (157), Expect = 5e-11
Identities = 34/93 (36%), Positives = 50/93 (53%)
Frame = +3
Query: 48 KIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVNTFKYYQM 227
+II G + H P M S+ G HFCGG L+N VL+ AHC W + Y M
Sbjct: 22 RIIGGHECAAHSRPFMASLNY-GYHFCGGVLINNQWVLSVAHC-W---------YNPYAM 70
Query: 228 KVYMGEYDLYRMYGVEKIFQVTKTIIHPSYRHE 326
+V +GE+DL + G E++ + I HP+Y ++
Sbjct: 71 QVMLGEHDLRKFEGTEQLMKTDTIIWHPNYDYQ 103
>sp|P32038|CFAD_RAT Complement factor D precursor (C3 convertase activator) (Properdin
factor D) (Adipsin) (Endogenous vascular elastase)
Length = 263
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/98 (30%), Positives = 51/98 (52%)
Frame = +3
Query: 27 CAVTSGWKIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVN 206
C +I+ G +A+ H P M S++V G H CGGTL++ VL+AAHC+ + +V
Sbjct: 18 CVAQPRGRILGGQEAMAHARPYMASVQVNGTHVCGGTLVDEQWVLSAAHCMDGVTKDEV- 76
Query: 207 TFKYYQMKVYMGEYDLYRMYGVEKIFQVTKTIIHPSYR 320
++V +G + L + ++ V ++HP R
Sbjct: 77 ------VQVLLGAHSLSSPEPYKHLYDVQSVVLHPGSR 108
>sp|P32822|TRYB_RAT Trypsin V-B precursor
Length = 246
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = +3
Query: 48 KIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVNTFKYYQM 227
+I+ G H P VS+ G+H CGG+L+ VL+AAHC + Q+
Sbjct: 24 RIVGGYTCQEHSVPYQVSLNA-GSHICGGSLITDQWVLSAAHCY------------HPQL 70
Query: 228 KVYMGEYDLYRMYGVEKIFQVTKTIIHPSY 317
+V +GE+++Y + G E+ K I+HP Y
Sbjct: 71 QVRLGEHNIYEIEGAEQFIDAAKMILHPDY 100
>sp|P32821|TRYA_RAT Trypsin V-A precursor
Length = 246
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = +3
Query: 48 KIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVNTFKYYQM 227
+I+ G H P VS+ G+H CGG+L+ VL+AAHC + Q+
Sbjct: 24 RIVGGYTCQEHSVPYQVSLNA-GSHICGGSLITDQWVLSAAHCY------------HPQL 70
Query: 228 KVYMGEYDLYRMYGVEKIFQVTKTIIHPSY 317
+V +GE+++Y + G E+ K I+HP Y
Sbjct: 71 QVRLGEHNIYEIEGAEQFIDAAKMILHPDY 100
>sp|P03953|CFAD_MOUSE Complement factor D precursor (C3 convertase activator) (Properdin
factor D) (Adipsin) (28 kDa protein, adipocyte)
Length = 259
Score = 60.1 bits (144), Expect = 2e-09
Identities = 32/98 (32%), Positives = 50/98 (51%)
Frame = +3
Query: 27 CAVTSGWKIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVN 206
CA +I+ G +A H P M S++V G H CGGTLL+ VL+AAHC+ + + D
Sbjct: 18 CAAQPRGRILGGQEAAAHARPYMASVQVNGTHVCGGTLLDEQWVLSAAHCMDGVTDDD-- 75
Query: 207 TFKYYQMKVYMGEYDLYRMYGVEKIFQVTKTIIHPSYR 320
++V +G + L ++ + V + HP R
Sbjct: 76 -----SVQVLLGAHSLSAPEPYKRWYDVQSVVPHPGSR 108
>sp|P51779|CFAD_PIG Complement factor D precursor (C3 convertase activator) (Properdin
factor D) (Adipsin)
Length = 259
Score = 59.7 bits (143), Expect = 2e-09
Identities = 29/95 (30%), Positives = 51/95 (53%)
Frame = +3
Query: 27 CAVTSGWKIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVN 206
C +I+ G +A HE P M S++V G H CGG L++ VL+AAHC+ D+
Sbjct: 19 CVAQPRGRILGGQEAKSHERPYMASVQVNGKHVCGGFLVSEQWVLSAAHCLEDVAEG--- 75
Query: 207 TFKYYQMKVYMGEYDLYRMYGVEKIFQVTKTIIHP 311
+++V +G + L + ++++ V + + HP
Sbjct: 76 -----KLQVLLGAHSLSQPEPSKRLYDVLRAVPHP 105
>sp|P47796|CTRA_GADMO Chymotrypsin A precursor
Length = 263
Score = 58.2 bits (139), Expect = 6e-09
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 33 VTSGWKIINGSQAIMHEYPQMVSIKVQ-GNHFCGGTLLNGNTVLTAAHCVWDMRNWDVNT 209
+T +I+NG +A+ H + VS++ Q G HFCGG+L+N N V+TAAHC N
Sbjct: 28 ITGYSRIVNGEEAVPHSWSWQVSLQDQTGFHFCGGSLINENWVVTAAHC---------NV 78
Query: 210 FKYYQMKVYMGEYDLYRMYGVEKIFQVTKTIIHPSY 317
Y+ +V +GE+D ++ V + HP Y
Sbjct: 79 KNYH--RVVLGEHDRSSNSEGVQVMTVGQVFKHPRY 112
>sp|P40313|CTRL_HUMAN Chymotrypsin-like protease CTRL-1 precursor
Length = 264
Score = 57.4 bits (137), Expect = 1e-08
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Frame = +3
Query: 30 AVTSGWKIINGSQAIMHEYPQMVSIK-VQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVN 206
A++ +I+NG A++ +P VS++ G HFCGG+L++ + V+TAAHC +V+
Sbjct: 27 ALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC-------NVS 79
Query: 207 TFKYYQMKVYMGEYDLYRMYGVEKIFQVTKTIIHPSY 317
+++ V +GEYD ++ V++ I HPS+
Sbjct: 80 PGRHF---VVLGEYDRSSNAEPLQVLSVSRAITHPSW 113
>sp|P80646|CTRB_GADMO Chymotrypsin B [Contains: Chymotrypsin B chain A; Chymotrypsin B
chain B]
Length = 245
Score = 57.4 bits (137), Expect = 1e-08
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 33 VTSGWKIINGSQAIMHEYPQMVSIKVQ-GNHFCGGTLLNGNTVLTAAHCVWDMRNWDVNT 209
VT +I+NG +A+ H +P VS++ G HFCGG+L+N N V+TAAHC +V T
Sbjct: 10 VTGYARIVNGEEAVPHSWPWQVSLQQSNGFHFCGGSLINENWVVTAAHC-------NVRT 62
Query: 210 FKYYQMKVYMGEYDLYRMYGVEKIFQVTKTIIHPSY 317
+ +V +GE+D ++ I + + HP +
Sbjct: 63 YH----RVIVGEHDKASDENIQ-ILKPSMVFTHPKW 93
>sp|Q29463|TRY2_BOVIN Anionic trypsin precursor
Length = 247
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/90 (34%), Positives = 46/90 (51%)
Frame = +3
Query: 48 KIINGSQAIMHEYPQMVSIKVQGNHFCGGTLLNGNTVLTAAHCVWDMRNWDVNTFKYYQM 227
KI+ G + P VS+ G HFCGG+L+N V++AAHC Y +
Sbjct: 23 KIVGGYTCAENSVPYQVSLNA-GYHFCGGSLINDQWVVSAAHCY------------QYHI 69
Query: 228 KVYMGEYDLYRMYGVEKIFQVTKTIIHPSY 317
+V +GEY++ + G E+ +K I HP Y
Sbjct: 70 QVRLGEYNIDVLEGGEQFIDASKIIRHPKY 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,162,773
Number of Sequences: 369166
Number of extensions: 877567
Number of successful extensions: 2366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2288
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)