Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B24
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28070|PSB4_HUMAN Proteasome subunit beta type 4 precurs... 81 7e-16
sp|Q29384|PSB4_PIG Proteasome subunit beta type 4 precursor... 81 7e-16
sp|P99026|PSB4_MOUSE Proteasome subunit beta type 4 precurs... 80 1e-15
sp|P28024|PSB4_XENLA Proteasome subunit beta type 4 precurs... 80 1e-15
sp|P34067|PSB4_RAT Proteasome subunit beta type 4 precursor... 80 2e-15
sp|P30657|PSB4_YEAST Proteasome component pre4 (Macropain s... 73 2e-13
sp|Q9USQ9|PSB4_SCHPO Probable proteasome subunit beta type 4 71 7e-13
sp|Q9VNA5|PSB4_DROME Probable proteasome subunit beta type 4 67 1e-11
sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type 4 precurs... 63 2e-10
sp|Q9V0N9|PSMB_PYRAB Proteasome beta subunit precursor (Mul... 38 0.006
>sp|P28070|PSB4_HUMAN Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3) (HSN3)
(HsBPROS26)
Length = 264
Score = 81.3 bits (199), Expect = 7e-16
Identities = 39/68 (57%), Positives = 50/68 (73%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS G+K+ GVVIAADMLGSYGS+ARF +I +++VN+ST+LG SGD ADFQ L
Sbjct: 49 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 108
Query: 183 TNTFKETI 206
+ +
Sbjct: 109 KQVLGQMV 116
>sp|Q29384|PSB4_PIG Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3)
Length = 154
Score = 81.3 bits (199), Expect = 7e-16
Identities = 39/68 (57%), Positives = 50/68 (73%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS G+K+ GVVIAADMLGSYGS+ARF +I +++VN+ST+LG SGD ADFQ L
Sbjct: 49 PMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYL 108
Query: 183 TNTFKETI 206
+ +
Sbjct: 109 KQVLGQMV 116
>sp|P99026|PSB4_MOUSE Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3)
Length = 264
Score = 80.5 bits (197), Expect = 1e-15
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS G+K+ GVVIAADMLGSYGS+ARF +I +++VN ST+LG SGD ADFQ L
Sbjct: 49 PMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 108
Query: 183 TNTFKETI 206
+ +
Sbjct: 109 KQVLGQMV 116
>sp|P28024|PSB4_XENLA Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3)
Length = 242
Score = 80.1 bits (196), Expect = 1e-15
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS G+K+ GV+IAADMLGSYGS+ARF +I ++KVN +T+LG SGD AD+Q L
Sbjct: 27 PMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYL 86
Query: 183 TNTFKETI 206
+ +
Sbjct: 87 KQVIDQMV 94
>sp|P34067|PSB4_RAT Proteasome subunit beta type 4 precursor (Proteasome beta chain)
(Macropain beta chain) (Multicatalytic endopeptidase
complex beta chain) (Proteasome chain 3) (RN3)
Length = 263
Score = 79.7 bits (195), Expect = 2e-15
Identities = 39/68 (57%), Positives = 49/68 (72%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS G+K+ GVVIAADMLGSYGS+ARF +I +++VN ST+LG SGD ADFQ L
Sbjct: 48 PMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYL 107
Query: 183 TNTFKETI 206
+ +
Sbjct: 108 KQVLGQMV 115
>sp|P30657|PSB4_YEAST Proteasome component pre4 (Macropain subunit pre4) (Proteinase YSCE
subunit pre4) (Multicatalytic endopeptidase complex
subunit pre4)
Length = 266
Score = 72.8 bits (177), Expect = 2e-13
Identities = 33/68 (48%), Positives = 48/68 (70%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS +KY +GV+IAAD LGSYGS+ RF+ +E L+ V +TV+G+SGD++D Q +
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 183 TNTFKETI 206
K+ +
Sbjct: 97 ERLLKDLV 104
>sp|Q9USQ9|PSB4_SCHPO Probable proteasome subunit beta type 4
Length = 262
Score = 71.2 bits (173), Expect = 7e-13
Identities = 32/60 (53%), Positives = 45/60 (75%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TG+S +K+ADGV+IAAD L SYGS+ARF D+E L KV +T++G GD++D+Q +
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
>sp|Q9VNA5|PSB4_DROME Probable proteasome subunit beta type 4
Length = 268
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/57 (57%), Positives = 43/57 (75%)
Frame = +3
Query: 12 TGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
TGTS GI+Y GV++AAD L SYGSMAR+ +IE + KVN + +LG SGD AD Q++
Sbjct: 56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSI 112
>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type 4 precursor (Proteasome subunit beta
type 7) (20S proteasome beta subunit G-1) (Proteasome
component H)
Length = 246
Score = 63.2 bits (152), Expect = 2e-10
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +3
Query: 3 PRATGTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTL 182
P TGTS IKY DGV++A+DM GSYGS R+ +IE + + ++LG SG+++DFQ +
Sbjct: 27 PYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEI 86
Query: 183 TNTFKE 200
E
Sbjct: 87 LRYLDE 92
>sp|Q9V0N9|PSMB_PYRAB Proteasome beta subunit precursor (Multicatalytic endopeptidase
complex beta subunit)
Length = 207
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 15 GTSESGIKYADGVVIAADMLGSYGSMARFDDIEGLLKVNSSTVLGVSGDVADFQTLTNTF 194
GT+ GI +DGVV+AAD S G++ ++ + K++ + +GDV D L
Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 195 K 197
+
Sbjct: 70 R 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,607,449
Number of Sequences: 369166
Number of extensions: 255893
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)