Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B23
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6DKP5|WDR13_PANTR WD-repeat protein 13 >gi|20140804|sp|... 173 2e-43
sp|Q91V09|WD13_MOUSE WD-repeat protein 13 173 2e-43
sp|P15877|DHG_ECOLI Quinoprotein glucose dehydrogenase (Glu... 34 0.17
sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated pro... 33 0.38
sp|P91134|PURA_CAEEL Probable adenylosuccinate synthetase (... 31 1.4
sp|P16380|RRPP_CHAV Phosphoprotein (P protein) 31 1.9
sp|O74910|YCSB_SCHPO Hypothetical WD-repeat protein C613.12... 31 1.9
sp|Q8VZY6|FIE2_MAIZE Polycomb group protein FIE2 (FERTILIZA... 30 2.5
sp|P05465|DHGA_ACICA Quinoprotein glucose dehydrogenase-A p... 30 3.2
sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3 30 4.2
>sp|Q6DKP5|WDR13_PANTR WD-repeat protein 13
sp|Q9H1Z4|WD13_HUMAN WD-repeat protein 13
Length = 485
Score = 173 bits (438), Expect = 2e-43
Identities = 83/165 (50%), Positives = 118/165 (71%)
Frame = +3
Query: 6 FQPMNNNLFVAGGSDGVIQVINLSTGKAVKSGRDKLGGMITALTFEESVGECLWIGNTQG 185
FQP+NNNL V G + + V+N+STGK VK G KL G + AL+F+ + G LW G+ +G
Sbjct: 268 FQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFD-APGRLLWAGDDRG 326
Query: 186 IIQSYLFEVGTGKITRAKRLTVSTKPCTISSLQSRAWINREARDPCLLVNASINSLLFFR 365
+ S+LF++ TGK+T+AKRL V + ++S+ +R+W++REARDP LL+NA +N LL +R
Sbjct: 327 SVFSFLFDMATGKLTKAKRLVVH-EGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385
Query: 366 IASSDGQIVLKNKFPIRHTEKIIHSSFCPLISFRQGACVVTGSED 500
+ ++G + LK FPI + + S FCPL+SFRQGACVVTGSED
Sbjct: 386 VVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSED 430
>sp|Q91V09|WD13_MOUSE WD-repeat protein 13
Length = 485
Score = 173 bits (438), Expect = 2e-43
Identities = 83/165 (50%), Positives = 118/165 (71%)
Frame = +3
Query: 6 FQPMNNNLFVAGGSDGVIQVINLSTGKAVKSGRDKLGGMITALTFEESVGECLWIGNTQG 185
FQP+NNNL V G + + V+N+STGK VK G KL G + AL+F+ + G LW G+ +G
Sbjct: 268 FQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFD-APGRLLWAGDDRG 326
Query: 186 IIQSYLFEVGTGKITRAKRLTVSTKPCTISSLQSRAWINREARDPCLLVNASINSLLFFR 365
+ S+LF++ TGK+T+AKRL V + ++S+ +R+W++REARDP LL+NA +N LL +R
Sbjct: 327 SVFSFLFDMATGKLTKAKRLVVH-EGSPVTSISARSWVSREARDPSLLINACLNKLLLYR 385
Query: 366 IASSDGQIVLKNKFPIRHTEKIIHSSFCPLISFRQGACVVTGSED 500
+ ++G + LK FPI + + S FCPL+SFRQGACVVTGSED
Sbjct: 386 VVDNEGALQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSED 430
>sp|P15877|DHG_ECOLI Quinoprotein glucose dehydrogenase (Glucose dehydrogenase
[pyrroloquinoline-quinone])
Length = 796
Score = 34.3 bits (77), Expect = 0.17
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 21 NNLFVAGGSDGVIQVINLSTGKAVKSGRDKLGGMITALTFE 143
N LF+A +D ++ N+S G+ + GR GG T +T+E
Sbjct: 721 NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYE 761
>sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated protein 13 (U3 snoRNA-associated
protein 13)
Length = 817
Score = 33.1 bits (74), Expect = 0.38
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 21 NNLFVAGGSDGVIQVINLSTGKAVKSGRDKLGGMITALTFEESVGECLWI---GNTQGII 191
+ L GG+DG I V+++ G S + GG I++L F + +W+ G+T G++
Sbjct: 114 STLLAVGGTDGSIIVVDIENGYITHSFKGH-GGTISSLKFYGQLNSKIWLLASGDTNGMV 172
Query: 192 Q 194
+
Sbjct: 173 K 173
>sp|P91134|PURA_CAEEL Probable adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS)
(AMPSase)
Length = 434
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 42 GSDGVIQVINLSTGKAVKSGRDKLGGMITALTFEESVGECLWIGNTQGIIQSYLFEVGTG 221
G++G + I+ T V S +GG T + + +GN G++++Y VGTG
Sbjct: 230 GANGALLDIDFGTYPYVTSSNSTVGGACTGIGVPPTA-----VGNVIGVVKAYQTRVGTG 284
>sp|P16380|RRPP_CHAV Phosphoprotein (P protein)
Length = 293
Score = 30.8 bits (68), Expect = 1.9
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 220 PVPTSNKYDWIIP*VFPIQRHSPTDSSNVKAVIIPPNLSRPDFTALPVDKLIT*ITPSEP 41
P+P++++ I V Q SP SN I + D A+ + ++ I+PS+P
Sbjct: 179 PIPSTSRSSSIASNVSTRQTESPGSKSNTSLGIPEAPANLIDMGAIDKEFILAAISPSDP 238
Query: 40 PATNRL 23
P N L
Sbjct: 239 PYKNTL 244
>sp|O74910|YCSB_SCHPO Hypothetical WD-repeat protein C613.12c in chromosome III
Length = 638
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 3 EFQPMNNNLFVAGGSDGVIQVINLSTGKAVKSGRDKLGGMITALTFEESVGE 158
++QP NLFV GGSDG+++V +L ++ IT F E +
Sbjct: 553 QWQP-KGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASK 603
>sp|Q8VZY6|FIE2_MAIZE Polycomb group protein FIE2 (FERTILIZATION-INDEPENDENT ENDOSPERM 2)
Length = 379
Score = 30.4 bits (67), Expect = 2.5
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 27 LFVAGGSDGVIQVINLSTGKAVKS 98
L VA GS+G+I+VIN +T K KS
Sbjct: 105 LLVAAGSNGIIRVINCATEKLAKS 128
>sp|P05465|DHGA_ACICA Quinoprotein glucose dehydrogenase-A precursor (Glucose
dehydrogenase-A [pyrroloquinoline-quinone])
(Quinoprotein glucose DH) (GDH-A)
Length = 801
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 21 NNLFVAGGSDGVIQVINLSTGKAVKSGRDKLGGMITALTFE 143
N +FV D ++ N++ GK + R GG T +T+E
Sbjct: 727 NVMFVGATQDNYLRAFNVTNGKKLWEARLPAGGQATPMTYE 767
>sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3
Length = 341
Score = 29.6 bits (65), Expect = 4.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 3 EFQPMNNNLFVAGGSDGVIQVINLSTGKAVKS 98
EF P + L+ AG SDG+I NL T K +K+
Sbjct: 258 EFSPRHKFLYTAG-SDGIISCWNLQTRKKIKN 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,504,803
Number of Sequences: 369166
Number of extensions: 1174362
Number of successful extensions: 3034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3030
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)