Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B20
(389 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZJC7|NOC4L_CHICK Nucleolar complex protein 4 homolog (... 36 0.031
sp|Q5I0I8|NOC4L_RAT Nucleolar complex protein 4 homolog (NO... 33 0.15
sp|Q8BHY2|NOC4L_MOUSE Nucleolar complex protein 4 homolog (... 30 2.2
sp|Q7NDF8|RPOC1_GLOVI DNA-directed RNA polymerase gamma cha... 29 2.9
sp|P48413|VATB_CYACA Vacuolar ATP synthase subunit B (V-ATP... 28 4.9
sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary 28 4.9
sp|Q9NII1|ADAR_DROME Double-stranded RNA-specific editase A... 28 4.9
sp|Q20679|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-di... 28 6.4
sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary 28 6.4
sp|Q99594|TEAD3_HUMAN Transcriptional enhancer factor TEF-5... 28 8.4
>sp|Q5ZJC7|NOC4L_CHICK Nucleolar complex protein 4 homolog (NOC4 protein homolog)
(NOC4-like protein) (Nucleolar complex-associated
protein 4-like protein)
Length = 508
Score = 35.8 bits (81), Expect = 0.031
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Frame = +3
Query: 9 PENINKILKSILFNQDKD----IDEIFQNLKYIDICYYVIKFITEKLSSPTKL----SLD 164
P ++ K++ + L +D I + ++Y D+ Y+V+K +TE + + L
Sbjct: 138 PRHLLKVVVNGLIPIHEDASLLISRFQEYMEYEDVRYFVMKVVTESIGQVMQKIKERPLP 197
Query: 165 FYQK-VFTIATNVLDSDSDNTYLIXXXXXXXXXXFE-SVIDMHV----KMWMKFLKSPMP 326
FYQ+ VF++ + + + + + ++ S + H +MW+ FLK +P
Sbjct: 198 FYQQNVFSLISPINMPNKERDMVKFMMKQDNREEWKVSKLQAHKQAFERMWLTFLKHQLP 257
Query: 327 EDLRLDVMLTLGDEILDNVDD 389
L V++ L D IL +++
Sbjct: 258 SGLYKKVLVILHDSILPYMNE 278
>sp|Q5I0I8|NOC4L_RAT Nucleolar complex protein 4 homolog (NOC4 protein homolog)
(NOC4-like protein) (Nucleolar complex-associated
protein 4-like protein)
Length = 516
Score = 33.5 bits (75), Expect = 0.15
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +3
Query: 63 IDEIFQNLKYIDICYYVIKFITEKLSSPT----KLSLDFYQKVFTIATNV----LDSDSD 218
I + + L+Y DI Y+ ++ T L+ T ++SL F+ FT+ + V + +
Sbjct: 168 ISQFCEYLEYDDIRYHAMQVATSILARATSRQPEVSLTFWNNAFTLLSAVNLPLQEHELT 227
Query: 219 NTYL--IXXXXXXXXXXFESVIDMHVKMWMKFLKSPMPEDLRLDVMLTLGDEILDNV 383
N Y+ + +MW+ FLK +P L V++ + D IL ++
Sbjct: 228 NFYVKHAQTSSKWKVVHLKEQRKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHL 284
>sp|Q8BHY2|NOC4L_MOUSE Nucleolar complex protein 4 homolog (NOC4 protein homolog)
(NOC4-like protein) (Nucleolar complex-associated
protein 4-like protein)
Length = 516
Score = 29.6 bits (65), Expect = 2.2
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Frame = +3
Query: 63 IDEIFQNLKYIDICYYVIKFITEKLSSPT----KLSLDFYQKVFTIATNVL----DSDSD 218
I + L+Y DI Y+ ++ T ++ T ++SL + FT+ + V + +
Sbjct: 168 ISHFCEYLEYDDIRYHTMQVATSIMARATSQQPEVSLTLWNNAFTLLSAVSLPLQECELT 227
Query: 219 NTYLIXXXXXXXXXXFESVIDMHVK----MWMKFLKSPMPEDLRLDVMLTLGDEILDNV 383
N Y+ + H K MW+ FLK +P L V++ + D IL ++
Sbjct: 228 NFYVKHAQTSDKWKVVH--LKEHKKAFQEMWLGFLKHKLPLSLYKKVLVAMHDSILPHL 284
>sp|Q7NDF8|RPOC1_GLOVI DNA-directed RNA polymerase gamma chain (RNAP gamma subunit)
(Transcriptase gamma chain) (RNA polymerase gamma
subunit)
Length = 608
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Frame = +3
Query: 267 ESVIDMHVKMWMKF---LKSPMPEDLRL 341
+ +ID+H K+W++F +++ PEDLR+
Sbjct: 548 QGMIDLHAKIWLRFEGEVETDNPEDLRV 575
>sp|P48413|VATB_CYACA Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 500
Score = 28.5 bits (62), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 48 NQDKDIDEIFQNLKYIDICYYVIKFITEKLSSPTKLSLDFYQKVFTIATNVLD 206
NQDK + +IF+ ID V +F E L +P +SLD +VF + +D
Sbjct: 66 NQDKAVVQIFEGTTGIDNKKTVCQFTGEILKTP--VSLDMLGRVFNGSGKPID 116
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary
Length = 4466
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 276 IDMHVKMWMKFLKS---PMPEDLRLDVMLTLGDE 368
+D+ +MW+ FLKS P+P LDV+ L D+
Sbjct: 3379 VDLQERMWLPFLKSQKDPIPITEGLDVLSMLTDD 3412
>sp|Q9NII1|ADAR_DROME Double-stranded RNA-specific editase Adar (Adenosine deaminases
that act on RNA) (dsRNA adenosine deaminase) (RNA
editing deaminase 1) (RNA editing enzyme 1) (Pre-mRNA
adenosine deaminase) (dADAR)
Length = 676
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 45 FNQDKDIDEIFQNLKYIDICYYVIKFITEKLSSPTKLSLDFYQKVFTIATNVLDS 209
F D+ ++ +NL + + +TEKLS+PT L Q F ++ NV S
Sbjct: 145 FTSDEHLENGIENLSSSKMFEIIQTMLTEKLSNPTSLE----QPTFCMSQNVSKS 195
>sp|Q20679|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-dioxygenase precursor (Lysyl
hydroxylase) (LH) (Lethal protein 268)
Length = 730
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 18 INKILKSILFNQDKDIDEIFQNLKYIDICYYVIKFITEKLSSPTKLSLDFYQKVFTIATN 197
++KILK + +DKD D++ YY + ++ EKL + LD K+F
Sbjct: 164 MHKILK-LKSVEDKDDDQL----------YYTMIYLDEKLRKELNMDLDSMSKIFQNLNG 212
Query: 198 VLD 206
V++
Sbjct: 213 VIE 215
>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary
Length = 4466
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 276 IDMHVKMWMKFLKS---PMPEDLRLDVMLTLGDE 368
+D+ +MW+ FLKS P+P LDV+ L D+
Sbjct: 3379 VDLQDRMWLPFLKSQKDPIPITEGLDVLSMLTDD 3412
>sp|Q99594|TEAD3_HUMAN Transcriptional enhancer factor TEF-5 (TEA domain family member 3)
(TEAD-3) (DTEF-1)
Length = 435
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 99 ICYYVIKFITEKLSSPTKLSLDFYQKVFTIATNVLDSDSDNTYLI 233
+C Y+I FI + P K ++ + FTI V DS T L+
Sbjct: 367 MCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTSRDSQETLLV 411
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,111,914
Number of Sequences: 369166
Number of extensions: 435325
Number of successful extensions: 1188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)