Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B14
(789 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 305 7e-83
sp|P49154|RS2_URECA 40S ribosomal protein S2 295 7e-80
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 290 2e-78
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 289 7e-78
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 288 9e-78
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 286 3e-77
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 281 2e-75
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 280 2e-75
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 277 2e-74
sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 p... 266 4e-71
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 305 bits (782), Expect = 7e-83
Identities = 153/201 (76%), Positives = 173/201 (86%), Gaps = 2/201 (0%)
Frame = +2
Query: 71 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQ 247
++DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I PVQ
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96
Query: 248 KQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNK 427
KQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 428 LGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATL 607
+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV +KLL+MAGI+D YTSA G T TL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216
Query: 608 EYFAKATY-MVLEDI*YLSPD 667
FAKATY + + YL+PD
Sbjct: 217 GNFAKATYAAIAKTYAYLTPD 237
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 295 bits (756), Expect = 7e-80
Identities = 152/197 (77%), Positives = 167/197 (84%), Gaps = 2/197 (1%)
Frame = +2
Query: 83 KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTR 259
KEW P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTR
Sbjct: 44 KEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103
Query: 260 AGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDT 439
AGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKP 163
Query: 440 HTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEYFA 619
HTVPCKVTGKCGSV VRLIPAPRGTGIV APV +KLL+MAGI D YTSA GQTATL FA
Sbjct: 164 HTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFA 223
Query: 620 KATY-MVLEDI*YLSPD 667
KATY + YL+PD
Sbjct: 224 KATYAAIAATYSYLTPD 240
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 290 bits (743), Expect = 2e-78
Identities = 149/199 (74%), Positives = 167/199 (83%), Gaps = 2/199 (1%)
Frame = +2
Query: 77 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 253
+ KEW P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100
Query: 254 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 433
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160
Query: 434 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEY 613
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV +KLL MAGI D YTSA G TATL
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220
Query: 614 FAKATY-MVLEDI*YLSPD 667
FAKAT+ + + YL+PD
Sbjct: 221 FAKATFDAISKTYSYLTPD 239
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 289 bits (739), Expect = 7e-78
Identities = 147/199 (73%), Positives = 167/199 (83%), Gaps = 2/199 (1%)
Frame = +2
Query: 77 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 253
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 254 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 433
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 434 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEY 613
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV +KLL MAGI D YTSA G TATL
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 614 FAKATY-MVLEDI*YLSPD 667
FAKAT+ + + YL+PD
Sbjct: 236 FAKATFDAISKTYSYLTPD 254
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 288 bits (738), Expect = 9e-78
Identities = 147/199 (73%), Positives = 167/199 (83%), Gaps = 2/199 (1%)
Frame = +2
Query: 77 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 253
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 254 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 433
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 434 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEY 613
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV +KLL MAGI D YTSA G TATL
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 614 FAKATY-MVLEDI*YLSPD 667
FAKAT+ + + YL+PD
Sbjct: 236 FAKATFDAISKTYSYLTPD 254
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 286 bits (733), Expect = 3e-77
Identities = 146/199 (73%), Positives = 166/199 (83%), Gaps = 2/199 (1%)
Frame = +2
Query: 77 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 253
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 49 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 108
Query: 254 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 433
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 168
Query: 434 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEY 613
HTVPCKVTG+CGSV VRLIP PRGTGIV APV +KLL MAGI D YTSA G TATL
Sbjct: 169 KPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 228
Query: 614 FAKATY-MVLEDI*YLSPD 667
FAKAT+ + + YL+PD
Sbjct: 229 FAKATFDAISKTYSYLTPD 247
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 281 bits (718), Expect = 2e-75
Identities = 144/193 (74%), Positives = 163/193 (84%), Gaps = 2/193 (1%)
Frame = +2
Query: 95 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 271
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 272 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 451
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 452 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEYFAKATY 631
CKVTG+CGSV VRLIPAPRGTGIV APV +KLL MAGI D YTSA G TATL FAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 632 -MVLEDI*YLSPD 667
+ + YL+PD
Sbjct: 182 DAISKTYSYLTPD 194
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 280 bits (717), Expect = 2e-75
Identities = 145/200 (72%), Positives = 162/200 (81%), Gaps = 1/200 (0%)
Frame = +2
Query: 71 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQK 250
EK++ EW P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PVQK
Sbjct: 52 EKET-EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQK 110
Query: 251 QTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKL 430
QT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+V+PVR+GYWGNK+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 431 GDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLE 610
G HTVPCKVTGKC SV VRLIPAPRGTGIV APV +KLL MAGI+D YT+A G TATL
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230
Query: 611 YFAKATYMVLE-DI*YLSPD 667
FAKATY L+ YL+PD
Sbjct: 231 NFAKATYAALQRTYSYLTPD 250
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 277 bits (709), Expect = 2e-74
Identities = 127/185 (68%), Positives = 155/185 (83%)
Frame = +2
Query: 77 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 256
+ KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQT
Sbjct: 30 EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQT 89
Query: 257 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 436
RAGQRTRFKA V +GD++GHVGLG+KCAKEVATAIRGAI KLS++P+R+GYWG LGD
Sbjct: 90 RAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGD 149
Query: 437 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEYF 616
HTVP KV+GKCGSV+VRL+PAPRG G+V APVT++ L +AGI+D YT + G T TL F
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209
Query: 617 AKATY 631
KA +
Sbjct: 210 VKAAF 214
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 266 bits (681), Expect = 4e-71
Identities = 135/198 (68%), Positives = 158/198 (79%), Gaps = 1/198 (0%)
Frame = +2
Query: 77 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 256
++K W P TKLGRLV G V+ + EIY++S+PIKE +IID FL LKDEV+ I PVQKQT
Sbjct: 45 ETKSWTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFL-NLKDEVMKIVPVQKQT 103
Query: 257 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 436
RAGQRTRFKA V +GD+NGHVGLGVKCAKEVATAI GAI AKLSVIPVR+GYWGNKLG
Sbjct: 104 RAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGA 163
Query: 437 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTEKLLSMAGIQDVYTSANGQTATLEYF 616
HTVP KVTGKCGSV+VRL+PAPRGTGIV A V +KLL AG+ DVYTS+ G+T T+ F
Sbjct: 164 PHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNF 223
Query: 617 AKATYM-VLEDI*YLSPD 667
AT+ + + YL+PD
Sbjct: 224 VMATFFAITKTFAYLTPD 241
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,237,865
Number of Sequences: 369166
Number of extensions: 1683646
Number of successful extensions: 4371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4213
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)