Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B13
(682 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta... 224 2e-58
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 214 1e-55
sp|P26308|GBB1_DROME Guanine nucleotide-binding protein bet... 213 3e-55
sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein bet... 213 4e-55
sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I... 212 6e-55
sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein beta... 211 1e-54
sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I... 210 2e-54
sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I... 208 9e-54
sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/... 208 9e-54
sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I... 208 9e-54
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 224 bits (570), Expect = 2e-58
Identities = 101/114 (88%), Positives = 111/114 (97%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINA+T+FPNGF FATGSDDATCRLFDIR+DQEIGMYS+D+IICGITSVAFSKSGRLLL
Sbjct: 228 SDINAITYFPNGFAFATGSDDATCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGRLLL 287
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GGYDDFNCNVWD LKQ+RAGVLAGHDNRVSCLGV+EDGMA+ TGSWDSFL++WN
Sbjct: 288 GGYDDFNCNVWDVLKQERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 341
Score = 36.6 bits (83), Expect = 0.063
Identities = 22/98 (22%), Positives = 46/98 (46%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L++I + +I + + + S++ + R + G D + ++D
Sbjct: 160 TSSGDMTCALWNIETGNQITSFGGHT--GDVMSLSLAPDMRTFVSGACDASAKLFDIRDG 217
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 218 ICKQTFTGHESDINAITYFPNGFAFATGSDDATCRLFD 255
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 214 bits (546), Expect = 1e-55
Identities = 97/114 (85%), Positives = 109/114 (95%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINAV+FFPNG+ FATGSDDATCRLFD+R+DQE+ +YS+D+IICGITSVAFSKSGRLLL
Sbjct: 227 SDINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLL 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCNVWDTLK DRAGVLAGHDNRVSCLGV++DGMA+ TGSWDSFLR+WN
Sbjct: 287 AGYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/98 (26%), Positives = 46/98 (46%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ S + S++ S R + G D + +WD
Sbjct: 159 TSSGDTTCALWDIETAQQTTTFTGHS--GDVMSLSLSPDMRTFVSGACDASSKLWDIRDG 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH + ++ + +G A TGS D+ R+++
Sbjct: 217 MCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFD 254
Score = 32.7 bits (73), Expect = 0.90
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = +2
Query: 23 FFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSI-ICGITSVAFSKSGRLLLGGYDDF 199
+ P+G A G D C ++++++ + S + G S ++ D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDT 164
Query: 200 NCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
C +WD + GH V L +S D +G+ D+ ++W+
Sbjct: 165 TCALWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWD 212
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 213 bits (543), Expect = 3e-55
Identities = 97/114 (85%), Positives = 108/114 (94%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINAVTFFPNG FATGSDDATCRLFDIR+DQE+ MYS+D+IICGITSVAFSKSGRLLL
Sbjct: 227 SDINAVTFFPNGQAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLL 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCNVWDT+K +R+G+LAGHDNRVSCLGV+E+GMA+ TGSWDSFLRVWN
Sbjct: 287 AGYDDFNCNVWDTMKAERSGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN 340
Score = 36.2 bits (82), Expect = 0.082
Identities = 20/98 (20%), Positives = 47/98 (47%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D +C L+DI + ++ + + + +++ + + + G D + +WD +
Sbjct: 159 TSSGDMSCGLWDIETGLQVTSFLGHT--GDVMALSLAPQCKTFVSGACDASAKLWDIREG 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 217 VCKQTFPGHESDINAVTFFPNGQAFATGSDDATCRLFD 254
>sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein beta subunit 1
sp|Q61ZF6|GBB1_CAEBR Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 213 bits (542), Expect = 4e-55
Identities = 95/114 (83%), Positives = 108/114 (94%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINAV FFP+G FATGSDDATCRLFDIR+DQE+ MYS+D+IICGITSVAFSKSGRLL
Sbjct: 227 SDINAVAFFPSGNAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLF 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCNVWD+++Q+RAGVLAGHDNRVSCLGV+EDGMA+CTGSWDSFL++WN
Sbjct: 287 AGYDDFNCNVWDSMRQERAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ + + S++ S R + G D + +WD
Sbjct: 159 TSSGDMTCALWDIETGQQCTAFTGHT--GDVMSLSLSPDFRTFISGACDASAKLWDIRDG 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + G A TGS D+ R+++
Sbjct: 217 MCKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFD 254
Score = 33.5 bits (75), Expect = 0.53
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +2
Query: 23 FFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSI-ICGITSVAFSKSGRLLLGGYDDF 199
+ P+G A G D C ++ +++ + S + G S ++ D
Sbjct: 105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM 164
Query: 200 NCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
C +WD + GH V L +S D +G+ D+ ++W+
Sbjct: 165 TCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFISGACDASAKLWD 212
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 212 bits (540), Expect = 6e-55
Identities = 95/114 (83%), Positives = 108/114 (94%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINAVTFFPNG FATGSDDATCRLFDIR+DQE+ MYS+D+IICGITSVAFSKSG+LLL
Sbjct: 227 SDINAVTFFPNGHAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGKLLL 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCNVWD+++ +RAGVLAGHDNRVSCLGV+EDGMA+ TGSWDSFL++WN
Sbjct: 287 AGYDDFNCNVWDSMRTERAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/98 (25%), Positives = 47/98 (47%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ + + S++ S + R G D + +WD
Sbjct: 159 TSSGDMTCALWDIETGQQCTQFTGHT--GDVMSLSLSPNMRTFTSGACDASAKLWDIRDG 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 217 MCRQTFPGHESDINAVTFFPNGHAFATGSDDATCRLFD 254
Score = 30.8 bits (68), Expect = 3.4
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +2
Query: 23 FFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSI-ICGITSVAFSKSGRLLLGGYDDF 199
+ P+G A G D C ++ +++ + S + G S ++ D
Sbjct: 105 YAPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFVDDNQIVTSSGDM 164
Query: 200 NCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
C +WD + GH V L +S + +G+ D+ ++W+
Sbjct: 165 TCALWDIETGQQCTQFTGHTGDVMSLSLSPNMRTFTSGACDASAKLWD 212
>sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 211 bits (537), Expect = 1e-54
Identities = 96/114 (84%), Positives = 106/114 (92%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINA+T+FPNG FATGSDDATCRLFDIR+DQEIGMYS+D+IICGITSVAFSKSGRLLL
Sbjct: 228 SDINAITYFPNGHAFATGSDDATCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGRLLL 287
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
G YDDFNCNVWD LKQ+ GVLAGHDNRVSCLGV+EDG A+ TGSWDSFL++WN
Sbjct: 288 GRYDDFNCNVWDVLKQETHGVLAGHDNRVSCLGVTEDGSAVATGSWDSFLKIWN 341
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/98 (24%), Positives = 48/98 (48%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D +C L+DI + Q+ ++ + + S++ S R + G D + +WD
Sbjct: 160 TSSGDMSCALWDIETGQQTTSFTGHT--GDVMSLSTSPDFRTFVSGACDASAKLWDVRDG 217
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
+GH++ ++ + +G A TGS D+ R+++
Sbjct: 218 MCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLFD 255
>sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1) (XGbeta1)
Length = 340
Score = 210 bits (535), Expect = 2e-54
Identities = 95/114 (83%), Positives = 107/114 (93%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINA+ FFPNG FATGSDDATCRLFD+R+DQE+ +YS+D+IICGITSVAFSKSGRLLL
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLL 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCNVWDTLK DRAGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 287 AGYDDFNCNVWDTLKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/98 (24%), Positives = 48/98 (48%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ + + S++ + R + G D + +WD +
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDSRCFVSGACDASAKLWDVREG 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 326
Score = 208 bits (530), Expect = 9e-54
Identities = 92/114 (80%), Positives = 106/114 (92%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINAV FFPNG+ F TGSDDATCRLFD+R+DQE+ MYS+D+IICGITSVAFS+SGRLLL
Sbjct: 213 SDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLL 272
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCN+WD +K DRAGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 273 AGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 326
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ S + S++ + GR + G D + +WD
Sbjct: 145 TSSGDTTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDS 202
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 203 MCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD 240
Score = 36.6 bits (83), Expect = 0.063
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +2
Query: 23 FFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSI-ICGITSVAFSKSGRLLLGGYDDF 199
+ P+G A G D C ++ +++ + S + G S ++ D
Sbjct: 91 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDT 150
Query: 200 NCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
C +WD + AGH V L ++ DG +G+ D+ +++W+
Sbjct: 151 TCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 198
>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 340
Score = 208 bits (530), Expect = 9e-54
Identities = 92/114 (80%), Positives = 106/114 (92%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINAV FFPNG+ F TGSDDATCRLFD+R+DQE+ MYS+D+IICGITSVAFS+SGRLLL
Sbjct: 227 SDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLL 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCN+WD +K DRAGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 287 AGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 6e-05
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ S + S++ + GR + G D + +WD
Sbjct: 159 TSSGDTTCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDS 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 217 MCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD 254
Score = 36.6 bits (83), Expect = 0.063
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +2
Query: 23 FFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSI-ICGITSVAFSKSGRLLLGGYDDF 199
+ P+G A G D C ++ +++ + S + G S ++ D
Sbjct: 105 YAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDT 164
Query: 200 NCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
C +WD + AGH V L ++ DG +G+ D+ +++W+
Sbjct: 165 TCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 212
>sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 208 bits (530), Expect = 9e-54
Identities = 94/114 (82%), Positives = 106/114 (92%)
Frame = +2
Query: 2 SDINAVTFFPNGFGFATGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLL 181
SDINA+ FFPNG FATGSDDATCRLFD+R+DQE+ +YS+D+IICGITSVAFSKSGRLLL
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLL 286
Query: 182 GGYDDFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GYDDFNCNVWD LK DRAGVLAGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 45.4 bits (106), Expect = 1e-04
Identities = 25/98 (25%), Positives = 49/98 (50%)
Frame = +2
Query: 50 TGSDDATCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQ 229
T S D TC L+DI + Q+ ++ + + S++ + RL + G D + +WD +
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFAGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 230 DRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 343
GH++ ++ + +G A TGS D+ R+++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,647,618
Number of Sequences: 369166
Number of extensions: 1660621
Number of successful extensions: 5141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4798
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)