Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B08
(875 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 108 3e-23
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 108 3e-23
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 92 1e-18
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 89 1e-17
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 84 4e-16
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 84 4e-16
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 83 9e-16
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 82 1e-15
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 82 2e-15
sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen relat... 81 3e-15
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 108 bits (269), Expect = 3e-23
Identities = 64/155 (41%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
Frame = +1
Query: 139 SDHKDVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHS--KSEGKY 312
S K N LK HN+ RA H VP L L L + AQ+Y++ LA T HS S G+
Sbjct: 4 SASKQFNNEVLKAHNEYRAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 313 GENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGF 492
GENLA + Y TG WY EIK Y F + +G GHF+ +VWK+TK G
Sbjct: 64 GENLAWA-----SYDQTGKDVADRWYSEIKSYNFQQPGFTSGT-GHFTAMVWKNTKKIGV 117
Query: 493 GRAKCSNGNFIIVGQYKPPGNFL--GKFKENILSP 591
G+A S+G+ +V +Y P GN + G F+EN+ P
Sbjct: 118 GKASASDGSSFVVARYFPAGNIVNQGFFEENVPPP 152
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 108 bits (269), Expect = 3e-23
Identities = 63/155 (40%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Frame = +1
Query: 139 SDHKDVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHS--KSEGKY 312
S K + LK HN+ R H VP L L +L + AQ+Y++ LA T HS S G+
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 313 GENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGF 492
GENLA + Y TG WY EIK+Y F + +G GHF+ +VWK+TK G
Sbjct: 64 GENLAWA-----SYDQTGKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGV 117
Query: 493 GRAKCSNGNFIIVGQYKPPGNFL--GKFKENILSP 591
G+A S+G+ +V +Y P GN + G F+EN+L P
Sbjct: 118 GKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 92.4 bits (228), Expect = 1e-18
Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Frame = +1
Query: 136 NSDHKDVNETALKHHNKLRALHR-VPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKY 312
+SD D + L HNK RALH+ P L+ LA AQ+YAD + + +HS G Y
Sbjct: 156 DSDLSDFASSVLAEHNKKRALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHSG--GPY 213
Query: 313 GENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGF 492
GENLA ++ G AA WY+EI +Y F+ + GHF+QVVWK T G
Sbjct: 214 GENLALGYD--------GPAAVDAWYNEISNYDFSNPGFSSNT-GHFTQVVWKSTTQVGC 264
Query: 493 GRAKCSN--GNFIIVGQYKPPGNFLGKFKENI 582
G C G+++I Y P GN+ G++ +N+
Sbjct: 265 GIKTCGGAWGDYVIC-SYDPAGNYEGEYADNV 295
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 89.4 bits (220), Expect = 1e-17
Identities = 61/141 (43%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Frame = +1
Query: 169 LKHHNKLRALHRVPNLTLDWD--LAKSAQEYADILAKTNSFSHSKSEGKYGENLASSFNS 342
L HNK RALH V L W LA AQ YAD + +HS +G YGENLA
Sbjct: 30 LNEHNKFRALH-VDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLAL---- 82
Query: 343 KPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKC-SNGN 519
GY TG A WY EI Y ++ GHF+QVVWK T G G C + N
Sbjct: 83 --GYTDTG--AVDAWYGEISKYNYSNPGFSEST-GHFTQVVWKSTAEIGCGYKYCGTTWN 137
Query: 520 FIIVGQYKPPGNFLGKFKENI 582
IV Y PPGN+LG+F E +
Sbjct: 138 NYIVCSYNPPGNYLGEFAEEV 158
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 84.3 bits (207), Expect = 4e-16
Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +1
Query: 169 LKHHNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKYGENLASSFNSKP 348
L HN RA V LT D +A AQ YA LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----S 91
Query: 349 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 525
G T A + W DE + Y + G++ GH++QVVW+++ G R +C+NG ++
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYV 151
Query: 526 IVGQYKPPGNFLGK 567
+ Y PPGN+ G+
Sbjct: 152 VSCNYDPPGNYRGE 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 84.3 bits (207), Expect = 4e-16
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Frame = +1
Query: 136 NSDHKDVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKYG 315
+S ++ + L HN RA V LT D +A AQ Y LA + HS G+YG
Sbjct: 27 SSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYG 84
Query: 316 ENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGF 492
ENLA G T A + W DE + Y + G++ GH++QVVW+++ G
Sbjct: 85 ENLAQG----SGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGC 140
Query: 493 GRAKCSNGNFIIVGQYKPPGNFLGK 567
R KC+NG +++ Y PPGN +G+
Sbjct: 141 ARVKCNNGGYVVSCNYDPPGNVIGQ 165
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 83.2 bits (204), Expect = 9e-16
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +1
Query: 169 LKHHNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKYGENLASSFNSKP 348
L HN RA V LT D +A AQ YA LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----S 91
Query: 349 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 525
G T A + W +E + Y + G++ GH++QVVW+++ G R +C+NG +I
Sbjct: 92 GDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYI 151
Query: 526 IVGQYKPPGNFLGK 567
+ Y PPGN +GK
Sbjct: 152 VSCNYDPPGNVIGK 165
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 82.4 bits (202), Expect = 1e-15
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +1
Query: 178 HNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKYGENLASSFNSKPGYI 357
HN R+ V +T D +A A++YA A HS + +YGENLA F S G+
Sbjct: 39 HNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHS-GDPRYGENLA--FGS--GFE 93
Query: 358 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 534
TG A W E DY N GK+ GH++QVVW+++ G R +C+NG + I
Sbjct: 94 LTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITC 153
Query: 535 QYKPPGNFLGK 567
Y PPGN+ G+
Sbjct: 154 NYSPPGNYAGQ 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 82.0 bits (201), Expect = 2e-15
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Frame = +1
Query: 178 HNKLRALHRVPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKYGENLASSFNSKPGYI 357
HN RA V ++ D +LA AQ YA+ A + HS + GENLA K G
Sbjct: 35 HNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA----GENLA-----KGGGD 85
Query: 358 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 534
FTG AA Q W E DY + GK+ GH++QVVW+++ G GRA+C+NG + I
Sbjct: 86 FTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISC 145
Query: 535 QYKPPGNFLGK 567
Y P GN++G+
Sbjct: 146 NYDPVGNWVGE 156
>sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen related in Sc 2)
Length = 329
Score = 81.3 bits (199), Expect = 3e-15
Identities = 57/152 (37%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Frame = +1
Query: 139 SDHKDVNETALKHHNKLRALHR-VPNLTLDWDLAKSAQEYADILAKTNSFSHSKSEGKYG 315
S D + + + HN RALH+ +LT LA AQ YAD + + HS G YG
Sbjct: 187 SSSSDFSTSMVNEHNTKRALHKDTGSLTWSDTLATYAQNYADSYDCSGNLVHSG--GPYG 244
Query: 316 ENLASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFG 495
ENLA GY TG + WY+EI Y ++ GHF+QVVWK T G G
Sbjct: 245 ENLAL------GYGTTG--SVDAWYNEITSYDYSNPGFSESA-GHFTQVVWKGTSEVGCG 295
Query: 496 RAKCSN--GNFIIVGQYKPPGNFLGKFKENIL 585
C G++II YK GN +G+F +N++
Sbjct: 296 LKSCGGEWGDYIIC-SYKAAGNVIGEFADNVM 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,702,149
Number of Sequences: 369166
Number of extensions: 1858141
Number of successful extensions: 4116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3954
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)