Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B02
(725 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8IUC4|RHPN2_HUMAN Rhophilin-2 (GTP-Rho binding protein ... 30 5.0
sp|Q9M088|E135_ARATH Putative glucan endo-1,3-beta-glucosid... 30 8.6
sp|Q92508|FA38A_HUMAN Protein FAM38A 30 8.6
sp|Q8HXG3|RHPN2_CANFA Rhophilin-2 (GTP-Rho binding protein ... 30 8.6
>sp|Q8IUC4|RHPN2_HUMAN Rhophilin-2 (GTP-Rho binding protein 2) (76 kDa RhoB effector
protein) (p76RBE)
Length = 686
Score = 30.4 bits (67), Expect = 5.0
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 352 LPSM*SAIPRIRAKLPKPFPLIESNTWSY 438
LPS+ +A P+++ KLP PF L+ S++ Y
Sbjct: 658 LPSVGAARPQVKKKLPSPFSLLNSDSSWY 686
>sp|Q9M088|E135_ARATH Putative glucan endo-1,3-beta-glucosidase 5 precursor
((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Beta-1,3-glucanase)
Length = 484
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 554 PNQPAVRLGSIGSGRPVTDDDLLRDRFSKEHCLLAYDSEYDQVLDSIKGNGLGSFALIRG 375
PN P G+G P+ D+ + D D+ YD ++ S++ NG G+ +I G
Sbjct: 215 PNFPVEFAFFDGTGTPINDNGRIYDN--------VLDANYDTLVWSLQKNGFGNLTIIVG 266
>sp|Q92508|FA38A_HUMAN Protein FAM38A
Length = 2035
Score = 29.6 bits (65), Expect = 8.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 445 ILNTTRYWILLKEMAWEVLLLFEESPITLMAVPV 344
+L T +W+LL++ E LL + ESP L V V
Sbjct: 35 LLYTLTFWLLLRQFVKEKLLKWAESPAALTEVTV 68
>sp|Q8HXG3|RHPN2_CANFA Rhophilin-2 (GTP-Rho binding protein 2) (76 kDa RhoB effector
protein) (p76RBE)
Length = 686
Score = 29.6 bits (65), Expect = 8.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 352 LPSM*SAIPRIRAKLPKPFPLIESNTWSY 438
LPS+ A P+++ KLP PF L+ S++ Y
Sbjct: 658 LPSVGVARPQVKKKLPSPFSLLNSDSSLY 686
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,489,761
Number of Sequences: 369166
Number of extensions: 1441888
Number of successful extensions: 3155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3155
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)