Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A22
(835 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subuni... 289 6e-78
sp|Q9V3J1|VATH_DROME Vacuolar ATP synthase subunit H (V-ATP... 285 1e-76
sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATP... 284 2e-76
sp|Q8BVE3|VATH_MOUSE Vacuolar ATP synthase subunit H (V-ATP... 270 5e-72
sp|Q9UI12|VATH_HUMAN Vacuolar ATP synthase subunit H (V-ATP... 270 5e-72
sp|Q9TVC1|VATH_PIG Vacuolar ATP synthase subunit H (V-ATPas... 268 1e-71
sp|O46563|VATH_BOVIN Vacuolar ATP synthase subunit H (V-ATP... 265 2e-70
sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subuni... 188 1e-47
sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATP... 119 8e-27
sp|Q9LX65|VATH_ARATH Probable vacuolar ATP synthase subunit... 117 5e-26
>sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subunit H 2 (V-ATPase H subunit 2)
(Vacuolar proton pump H subunit 2) (Vacuolar proton pump
subunit SFD 2)
Length = 470
Score = 289 bits (740), Expect = 6e-78
Identities = 147/280 (52%), Positives = 203/280 (72%), Gaps = 3/280 (1%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFR-FPDNEYMQTVARNLQ 180
L+R++ FI Q S IIAK+AC+ + ME +DLQY+ ++++Q + N+YM T AR LQ
Sbjct: 134 LQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTNDYMNTTARCLQ 193
Query: 181 MMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSL 360
MMLR +YR FV+ GV+T+V AL GK N Q+QYQLIF +WCL+F+ADI K PSL
Sbjct: 194 MMLRHDEYRHEFVDSDGVQTLVTALNGKTNFQLQYQLIFAVWCLTFNADIAR---KAPSL 250
Query: 361 --ISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQ 534
I + DI+ ++ +EK+IR+ LA F +L K+ + RE AL MVQCK +K LEL+
Sbjct: 251 GLIQALGDILSESTKEKVIRIILASFVNILSKVDEREVKREAALQMVQCKTLKTLELMDA 310
Query: 535 KDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWRENADK 714
K Y DP+L DD+ +L E+L+ SV D+SS +EY E++SGRL+WSPVHK+EKFWRENA K
Sbjct: 311 KKYD-DPDLEDDVKFLTEELTLSVHDLSSYDEYYSEVRSGRLQWSPVHKSEKFWRENASK 369
Query: 715 FLDKNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
F DK FE++K+L++LL++S DP++L VA HD+GE+V HYP
Sbjct: 370 FNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYP 409
>sp|Q9V3J1|VATH_DROME Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 468
Score = 285 bits (728), Expect = 1e-76
Identities = 135/277 (48%), Positives = 202/277 (72%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFRFPDNEYMQTVARNLQM 183
L R++ FI +SRI+AK ACW + M DL ++L++++DQ +NEY+Q+VAR LQM
Sbjct: 127 LNRQDGFIVNMSSRILAKFACWGHETMPKSDLNFYLQFLKDQLASNNNEYIQSVARCLQM 186
Query: 184 MLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLI 363
MLR+ +YR FV G+ T++ L ++N Q+QYQLIFCLW L+F+ + ++ K S+I
Sbjct: 187 MLRVDEYRFAFVGVDGISTLIRILSTRVNFQVQYQLIFCLWVLTFNPLLAAKMNKF-SVI 245
Query: 364 SVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDY 543
+++DI+ +EK+ R+ LA+FR L+EK + + ++ +AMVQCK++KQL +L+Q+ +
Sbjct: 246 PILADILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCIAMVQCKVLKQLSILEQRRF 305
Query: 544 SHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWRENADKFLD 723
D ++T D+ YL EKL +SV+D+SS +EY E++SGRLEWSPVHK+ KFWRENA + +
Sbjct: 306 D-DEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHKSAKFWRENAQRLNE 364
Query: 724 KNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
KN+ELL++LV LL+TSKD I+L VA D+GE+V HYP
Sbjct: 365 KNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYP 401
>sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 475
Score = 284 bits (726), Expect = 2e-76
Identities = 131/277 (47%), Positives = 204/277 (73%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFRFPDNEYMQTVARNLQM 183
L R+++F+ + +RIIAK+ACW QLM+ DL ++L W++DQ + +N+Y+Q+VAR LQM
Sbjct: 135 LNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKMNNNDYIQSVARCLQM 194
Query: 184 MLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLI 363
MLR+ +YR F+ G+ T+++ L ++N Q+QYQL+FCLW L+F+ ++ + + + I
Sbjct: 195 MLRVDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLWVLTFN-PLLAEKMNKFNAI 253
Query: 364 SVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDY 543
+++DI+ + +EK+ R+ LA+FR L+EK +Q +E +AMVQCK++KQL +L+QK
Sbjct: 254 PILADILSDSVKEKVTRIVLAVFRNLIEKPQDQQVAKEHCIAMVQCKVLKQLSILEQK-R 312
Query: 544 SHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWRENADKFLD 723
S D ++ +D+ +L E+L +SV+D+SS ++Y E+KSGRLEWSPVHK+ KFWRENA + +
Sbjct: 313 SDDEDIMNDVEFLNERLQASVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNE 372
Query: 724 KNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
+ ELL+ LV LL+ S DP+VL VA +DVGE+V HYP
Sbjct: 373 RGQELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYP 409
>sp|Q8BVE3|VATH_MOUSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton
pump H subunit)
Length = 483
Score = 270 bits (689), Expect = 5e-72
Identities = 137/295 (46%), Positives = 197/295 (66%), Gaps = 18/295 (6%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFRFP-------------- 141
L R++ F + A+RIIAK+A W +LME DL Y+ WI+ Q
Sbjct: 130 LNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTI 189
Query: 142 ----DNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWC 309
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W
Sbjct: 190 SSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWL 249
Query: 310 LSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALA 489
L+F + + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + + +E ALA
Sbjct: 250 LAFSPQMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALA 308
Query: 490 MVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWS 669
M+QCK++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWS
Sbjct: 309 MIQCKVLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWS 367
Query: 670 PVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
PVHK+EKFWRENA + +KN+ELLK+L +LL+ S DP VL VA HDVGE+V HYP
Sbjct: 368 PVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYP 422
>sp|Q9UI12|VATH_HUMAN Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton
pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar
proton pump subunit SFD) (VMA13) (Nef binding protein 1)
(NBP1)
Length = 483
Score = 270 bits (689), Expect = 5e-72
Identities = 137/295 (46%), Positives = 197/295 (66%), Gaps = 18/295 (6%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFRFP-------------- 141
L R++ F + A+RIIAK+A W +LME DL Y+ WI+ Q
Sbjct: 130 LNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTV 189
Query: 142 ----DNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWC 309
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W
Sbjct: 190 SSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWL 249
Query: 310 LSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALA 489
L+F + + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + + +E ALA
Sbjct: 250 LAFSPQMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALA 308
Query: 490 MVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWS 669
M+QCK++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWS
Sbjct: 309 MIQCKVLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWS 367
Query: 670 PVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
PVHK+EKFWRENA + +KN+ELLK+L +LL+ S DP VL VA HDVGE+V HYP
Sbjct: 368 PVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYP 422
>sp|Q9TVC1|VATH_PIG Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton
pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar
proton pump subunit SFD)
Length = 483
Score = 268 bits (685), Expect = 1e-71
Identities = 136/295 (46%), Positives = 197/295 (66%), Gaps = 18/295 (6%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFRFP-------------- 141
L R++ F + A+RIIAK+A W +LME DL Y+ WI+ Q
Sbjct: 130 LNRQDLFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLASQKLRGSGVAVETGTV 189
Query: 142 ----DNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWC 309
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W
Sbjct: 190 SSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWL 249
Query: 310 LSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALA 489
L+F + + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + + +E ALA
Sbjct: 250 LAFSPQMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALA 308
Query: 490 MVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWS 669
++QCK++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWS
Sbjct: 309 LIQCKVLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWS 367
Query: 670 PVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
PVHK+EKFWRENA + +KN+ELLK+L +LL+ S DP VL VA HDVGE+V HYP
Sbjct: 368 PVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYP 422
>sp|O46563|VATH_BOVIN Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton
pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar
proton pump subunit SFD)
Length = 483
Score = 265 bits (676), Expect = 2e-70
Identities = 135/295 (45%), Positives = 194/295 (65%), Gaps = 18/295 (6%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQFRFP-------------- 141
L R++ F + +RIIAK+A W +LME DL Y+ WI+ Q
Sbjct: 130 LNRQDLFTVHMTARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVTAETGTV 189
Query: 142 ----DNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNTQIQYQLIFCLWC 309
++Y+Q VA LQ+MLR+ +YR +VE GV I+ L K Q+QYQ+IF +W
Sbjct: 190 SSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSVWL 249
Query: 310 LSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALA 489
L+F + + ++ ++I V+SDI++++ +EK+ R+ LA FR LEK + +E ALA
Sbjct: 250 LAFSPQMC-EHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSVERETRQEYALA 308
Query: 490 MVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWS 669
M+QCK++KQLE L+Q+ Y D ++++D+ +L EKL SV+D+SS +EY+ ELKSGRLEWS
Sbjct: 309 MIQCKVLKQLENLEQQKYD-DEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWS 367
Query: 670 PVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
PVHK+EKFWREN + +KN+ELLK+L +LL+ S DP VL VA HDVGE+V HYP
Sbjct: 368 PVHKSEKFWRENPARLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYP 422
>sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subunit H 1 (V-ATPase H subunit 1)
(Vacuolar proton pump H subunit 1) (Vacuolar proton pump
subunit SFD 1)
Length = 451
Score = 188 bits (478), Expect = 1e-47
Identities = 100/280 (35%), Positives = 169/280 (60%), Gaps = 3/280 (1%)
Frame = +1
Query: 4 LRRENKFIAYQASRIIAKIACWSSQLMETKDLQYFLRWIQDQF-RFPDNEYMQTVARNLQ 180
L R++++I + I+ K+A + + + +L Y + +++ R +N+Y+ T R +Q
Sbjct: 125 LHRQDQYIVHITFSILTKMAVFGNIKLSGDELDYCMGSLKEAMNRGTNNDYIVTAVRCMQ 184
Query: 181 MMLRIRQYRKVFVECSGVETIVNALGG--KLNTQIQYQLIFCLWCLSFDADIVIQIIKTP 354
+ R YR FV +G +++ +AL K QIQYQ+IFC+W L+F+ ++ +
Sbjct: 185 TLFRFDPYRVSFVNINGYDSLTHALYSTRKCGFQIQYQIIFCMWLLTFNGHAA-EVALSG 243
Query: 355 SLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQ 534
+LI +S I+ ++EK+IR+ ++ R L+ + ++ AL M+Q +I +L+ L+
Sbjct: 244 NLIQTISGILGNCQKEKVIRIVVSTLRNLITSNQDVYMKKQAALQMIQNRIPTKLDHLEN 303
Query: 535 KDYSHDPELTDDLAYLQEKLSSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWRENADK 714
+ ++ D +L +D+ YLQ +L V+ ++S +EY EL+ G L WSP HK E FW ENA +
Sbjct: 304 RKFT-DVDLVEDMVYLQTELKKVVQVLTSFDEYENELRQGSLHWSPAHKCEVFWNENAHR 362
Query: 715 FLDKNFELLKMLVELLKTSKDPIVLQVAIHDVGEFVSHYP 834
D ELLK+LV +L+ S DP+VL VA HD+GEFV +YP
Sbjct: 363 LNDNRQELLKLLVAMLEKSNDPLVLCVAAHDIGEFVRYYP 402
>sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 54 kDa subunit)
Length = 450
Score = 119 bits (299), Expect = 8e-27
Identities = 65/200 (32%), Positives = 116/200 (58%)
Frame = +1
Query: 235 ETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIR 414
E + N++G +TQ+QY +FC W L+F++ I I K LI ++ IIR + K+ R
Sbjct: 211 ELLRNSIG---DTQLQYYSLFCFWQLTFESHIAQDINKRFDLIKLLVQIIRSDTKTKVYR 267
Query: 415 VSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKL 594
+ LA+ L++K ++ M+ + K ++LLQ++ ++ D ++T+ L ++ L
Sbjct: 268 LVLAILVNLIDKAP-----KDTISTMLLEHVDKAVQLLQKRKWA-DEDITNYLDFITSTL 321
Query: 595 SSSVRDVSSMEEYTIELKSGRLEWSPVHKAEKFWRENADKFLDKNFELLKMLVELLKTSK 774
S + +S+ + Y EL +G L WSP H++E FW +NA + + N+ LLK L +++ ++
Sbjct: 322 DESSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNE 381
Query: 775 DPIVLQVAIHDVGEFVSHYP 834
D L VA HD+G ++ YP
Sbjct: 382 DNTSLAVACHDLGAYIRSYP 401
>sp|Q9LX65|VATH_ARATH Probable vacuolar ATP synthase subunit H (V-ATPase H subunit)
(Vacuolar proton pump H subunit) (Vacuolar proton pump
subunit SFD)
Length = 441
Score = 117 bits (292), Expect = 5e-26
Identities = 69/250 (27%), Positives = 135/250 (54%), Gaps = 5/250 (2%)
Frame = +1
Query: 97 LQYFLRWIQDQFRFPDNEY--MQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGG--- 261
L+ + W+ Q + P + + L +L+ R FV+ GV+ +V +
Sbjct: 151 LKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPAST 210
Query: 262 KLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYL 441
+ + Q+ Y+ C+W LS+ + I+ + T + ++++++ + +EK++RV + FR L
Sbjct: 211 QQSIQLLYETCLCIWLLSY-YEPAIEYLATSRTMQRLTEVVKHSTKEKVVRVVILTFRNL 269
Query: 442 LEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQEKLSSSVRDVSS 621
L K + Q+ ++ L + + L+ + +S D +L D L L+E L ++ +SS
Sbjct: 270 LPKGTFGAQMVDLGLPHI-------IHSLKTQAWS-DEDLLDALNQLEEGLKDKIKKLSS 321
Query: 622 MEEYTIELKSGRLEWSPVHKAEKFWRENADKFLDKNFELLKMLVELLKTSKDPIVLQVAI 801
++Y E+ G L+W+P+HK FWREN F + +F++L++L+ +L TS DP L VA
Sbjct: 322 FDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVAC 381
Query: 802 HDVGEFVSHY 831
D+ +F+ ++
Sbjct: 382 FDISQFIQYH 391
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,776,612
Number of Sequences: 369166
Number of extensions: 1822887
Number of successful extensions: 5091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5065
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)