Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A15
(424 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEP... 82 4e-16
sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin... 80 2e-15
sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEP... 80 2e-15
sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proep... 78 7e-15
sp|P80059|PMD1_LOCMI Pars intercerebralis major peptide D1 ... 64 2e-10
sp|P80930|ENA1_HORSE Antimicrobial peptide eNAP-1 59 3e-09
sp|P81013|GRN1_CYPCA Granulin-1 54 2e-07
sp|P81014|GRN2_CYPCA Granulin-2 50 2e-06
sp|P81015|GRN3_CYPCA Granulin-3 46 4e-05
sp|P43297|RD21A_ARATH Cysteine proteinase RD21a precursor (... 43 3e-04
>sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
Granulin-1; Granulin-2; Granulin-3; Granulin-4;
Granulin-5; Granulin-6; Granulin-7]
Length = 591
Score = 82.4 bits (202), Expect = 4e-16
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Frame = +1
Query: 58 TPGLLKENLN---ICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTC 228
+PGLL L IC + ++ C D TCC SG + CC NA+CC D LHCCP+ T C
Sbjct: 194 SPGLLPAALPTSVICPDSRSQCPDDTTCCLLASGEYGCCPMPNAICCSDHLHCCPQDTVC 253
Query: 229 DLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQCA 408
DL RC+ Q+ + + P +TV + ++ + +CP+G C
Sbjct: 254 DLRQSRCLSQNK----------AKTLLTKLPSWTV-------WDVECDQEVSCPEGQTCC 296
Query: 409 GLQT 420
LQ+
Sbjct: 297 RLQS 300
Score = 67.4 bits (163), Expect = 1e-11
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +1
Query: 91 CQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQ-SNE 267
C G+ C D TCC G CC A CC D++HCCP G +CDLV+ RC+ +
Sbjct: 112 CPGGEFECPDSSTCCHMLDGSWGCCPMPQASCCEDRVHCCPHGASCDLVHIRCVTALGSH 171
Query: 268 PI--EWPVVETIDSAKIETPKYT--VERSTLREFMIKIGDKNNCPDGGQC 405
P+ + P T + TP + + + L +I ++ CPD C
Sbjct: 172 PLTTKLPAQRTNYTGAEGTPVVSPGLLPAALPTSVICPDSRSQCPDDTTC 221
Score = 67.4 bits (163), Expect = 1e-11
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 82 LNICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQS 261
+++ + C D++TCC GG CC + VCC DQ HCCP G C+ RC+H+
Sbjct: 514 MDVACGDRHFCHDEQTCCRDSRGGWACCPFHQGVCCKDQRHCCPAGFHCESQGTRCVHKK 573
Query: 262 N 264
+
Sbjct: 574 S 574
Score = 60.8 bits (146), Expect = 1e-09
Identities = 34/112 (30%), Positives = 49/112 (43%)
Frame = +1
Query: 70 LKENLNICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRC 249
L + ++ + A C ++TCC GG CCQ +AVCC D HCCP G TC++ + C
Sbjct: 433 LSQTTDVGCDQHASCPVRQTCCPKLGGGWACCQLPHAVCCEDGQHCCPAGYTCNVKARSC 492
Query: 250 IHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQC 405
+ D A + P ST + GD++ C D C
Sbjct: 493 ------------EKAADGAHLAAP--LAVGSTGGVMDVACGDRHFCHDEQTC 530
Score = 53.9 bits (128), Expect = 1e-07
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRC 249
C + +TCC +SG CC + AVCC D +HCCPE C C
Sbjct: 289 CPEGQTCCRLQSGKWGCCPFPKAVCCEDHVHCCPERFRCHTEKDTC 334
Score = 46.2 bits (108), Expect = 3e-05
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 91 CQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQ 258
CQ+ A C +C + +G CC +S A+ CGD HCCP G C CI +
Sbjct: 47 CQS-PANCPIGHSCVLTAAGTAACCPFSQAMACGDGHHCCPYGFHCSTDGGTCIQR 101
>sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin; Granulin-1 (Granulin G);
Granulin-2 (Granulin F); Granulin-3 (Granulin B)
(Epithelin-2); Granulin-4 (Granulin A) (Epithelin-1);
Granulin-5 (Granulin C); Granulin-6 (Granulin D);
Granulin-7 (Granulin E)]
Length = 588
Score = 80.1 bits (196), Expect = 2e-15
Identities = 37/111 (33%), Positives = 51/111 (45%)
Frame = +1
Query: 88 ICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNE 267
+C + K C D TCC +G + CC NA+CC D LHCCP+ T CDL+ +CI +
Sbjct: 205 VCPDAKTQCPDDSTCCELPTGKYGCCPMPNAICCSDHLHCCPQDTVCDLIQSKCISK--- 261
Query: 268 PIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQCAGLQT 420
+ + P Y V +K + +CPDG C L T
Sbjct: 262 -------DYTTDLMTKLPGYPVNE-------VKCDLEVSCPDGYTCCRLNT 298
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/110 (31%), Positives = 48/110 (43%)
Frame = +1
Query: 91 CQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNEP 270
C + C D TCC G CC A CC D++HCCP G +CDLV+ RCI +
Sbjct: 125 CPGSQFECPDSATCCIMIDGSWGCCPMPQASCCEDRVHCCPHGASCDLVHTRCISPTG-- 182
Query: 271 IEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQCAGLQT 420
P+++ + P R+ ++ K CPD C L T
Sbjct: 183 -THPLLK-------KFPAQRTNRAVASFSVVCPDAKTQCPDDSTCCELPT 224
Score = 60.1 bits (144), Expect = 2e-09
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = +1
Query: 28 CNILQHVIAKTPGLLKENLNICQNGKA---------LCGDQKTCCASKSGGHQCCQYSNA 180
CN+ K G ++ ++++ K C D ++CC GG CC Y
Sbjct: 485 CNVKARTCEKDAGSVQPSMDLTFGSKVGNVECGAGHFCHDNQSCCKDSQGGWACCPYVKG 544
Query: 181 VCCGDQLHCCPEGTTCDLVNKRCIHQ 258
VCC D HCCP G C +C+ +
Sbjct: 545 VCCRDGRHCCPIGFHCSAKGTKCLRK 570
Score = 58.2 bits (139), Expect = 7e-09
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRC 249
C +TCC S G CCQ +AVCC D+ HCCP G TC++ + C
Sbjct: 447 CPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARTC 492
Score = 56.6 bits (135), Expect = 2e-08
Identities = 29/103 (28%), Positives = 44/103 (42%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNEPIEWPVVE 291
C D TCC +G CC ++ AVCC D +HCCP G C H E V++
Sbjct: 287 CPDGYTCCRLNTGAWGCCPFTKAVCCEDHIHCCPAGFQC--------HTETGTCELGVLQ 338
Query: 292 TIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQCAGLQT 420
K+ T ++ + + + D ++CP C L +
Sbjct: 339 VPWMKKV-TASLSLPDPQILKNDVPCDDFSSCPSNNTCCRLSS 380
Score = 50.8 bits (120), Expect = 1e-06
Identities = 19/39 (48%), Positives = 20/39 (51%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTC 228
C TCC SG CC AVCC D HCCP+G C
Sbjct: 369 CPSNNTCCRLSSGDWGCCPMPEAVCCLDHQHCCPQGFKC 407
Score = 48.1 bits (113), Expect = 7e-06
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRC 249
C D +C + SG CC +S V C D HCCP G C K C
Sbjct: 67 CPDGYSCLLTVSGTSSCCPFSEGVSCDDGQHCCPRGFHCSADGKSC 112
>sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
Paragranulin; Granulin-1 (Granulin G); Granulin-2
(Granulin F); Granulin-3 (Granulin B); Granulin-4
(Granulin A); Granulin-5 (Granulin C); Granulin-6
(Granulin D); Granulin-7 (Granulin E)]
Length = 593
Score = 79.7 bits (195), Expect = 2e-15
Identities = 37/111 (33%), Positives = 54/111 (48%)
Frame = +1
Query: 88 ICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNE 267
+C + ++ C D TCC SG + CC NA CC D LHCCP+ T CDL+ +C+ + N
Sbjct: 207 MCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENA 266
Query: 268 PIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQCAGLQT 420
+ + P +TV +K + +CPDG C LQ+
Sbjct: 267 TTD---------LLTKLPAHTVGD-------VKCDMEVSCPDGYTCCRLQS 301
Score = 69.3 bits (168), Expect = 3e-12
Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 91 CQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNEP 270
C + + C D TCC G CC A CC D++HCCP G CDLV+ RCI +
Sbjct: 126 CPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTG-- 183
Query: 271 IEWPVVETIDSAKIETPKYTVERSTLREFMIKIGD-KNNCPDGGQCAGL 414
T AK + P R+ + D ++ CPDG C L
Sbjct: 184 -------THPLAK-KLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCEL 224
Score = 63.9 bits (154), Expect = 1e-10
Identities = 31/86 (36%), Positives = 43/86 (50%)
Frame = +1
Query: 22 ALCNILQHVIAKTPGLLKENLNICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQL 201
A ++L + A T G +K ++ + C D TCC +SG CC ++ AVCC D +
Sbjct: 266 ATTDLLTKLPAHTVGDVKCDMEVS------CPDGYTCCRLQSGAWGCCPFTQAVCCEDHI 319
Query: 202 HCCPEGTTCDLVNKRCIHQSNEPIEW 279
HCCP G TCD C Q + W
Sbjct: 320 HCCPAGFTCDTQKGTC-EQGPHQVPW 344
Score = 58.2 bits (139), Expect = 7e-09
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRC 249
C +TCC S G CCQ +AVCC D+ HCCP G TC++ + C
Sbjct: 450 CPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSC 495
Score = 57.4 bits (137), Expect = 1e-08
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQ 258
C D +TCC G CC Y VCC D+ HCCP G C +C+ +
Sbjct: 527 CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRR 575
Score = 55.8 bits (133), Expect = 4e-08
Identities = 26/62 (41%), Positives = 31/62 (50%)
Frame = +1
Query: 43 HVIAKTPGLLKENLNICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGT 222
H+ P LK ++ C N + C TCC SG CC AVCC D HCCP+G
Sbjct: 351 HLSLPDPQALKRDVP-CDNVSS-CPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGY 408
Query: 223 TC 228
TC
Sbjct: 409 TC 410
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/72 (33%), Positives = 32/72 (44%)
Frame = +1
Query: 46 VIAKTPGLLKENLNICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTT 225
++ K P L +L A C +C + SG CC + AV CGD HCCP G
Sbjct: 45 LLDKWPTTLSRHLGGPCQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFH 104
Query: 226 CDLVNKRCIHQS 261
C + C +S
Sbjct: 105 CSADGRSCFQRS 116
>sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proepithelin) (PEPI) (PC
cell-derived growth factor) (PCDGF) [Contains: Granulin
1; Granulin 2; Granulin 3; Granulin 4; Granulin 5;
Granulin 6; Granulin 7]
Length = 589
Score = 78.2 bits (191), Expect = 7e-15
Identities = 37/111 (33%), Positives = 54/111 (48%)
Frame = +1
Query: 88 ICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNE 267
+C + K C D TCC +G + CC NA+CC D LHCCP+ T CDL+ +C+ ++
Sbjct: 206 VCPDAKTQCPDDSTCCELPTGKYGCCPMPNAICCSDHLHCCPQDTVCDLIQSKCLSKN-- 263
Query: 268 PIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCPDGGQCAGLQT 420
T D + P Y V+ +K + +CP+G C L T
Sbjct: 264 -------YTTD-LLTKLPGYPVKE-------VKCDMEVSCPEGYTCCRLNT 299
Score = 70.1 bits (170), Expect = 2e-12
Identities = 35/111 (31%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Frame = +1
Query: 91 CQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNEP 270
C + C D TCC G CC A CC D++HCCP G +CDLV+ RC+ +
Sbjct: 125 CPGSQFECPDSATCCIMVDGSWGCCPMPQASCCEDRVHCCPHGASCDLVHTRCVSPTG-- 182
Query: 271 IEWPVVETIDSAKIETPKYTVERSTLREFMIKIGD-KNNCPDGGQCAGLQT 420
+ + P R+ F + D K CPD C L T
Sbjct: 183 --------THTLLKKFPAQKTNRAVSLPFSVVCPDAKTQCPDDSTCCELPT 225
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNEPIEWPVVE 291
C +TCC S G CCQ +AVCC D+ HCCP G TC++ + C + + I+ PV+
Sbjct: 448 CPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARTC-EKDVDFIQPPVLL 506
Query: 292 TI 297
T+
Sbjct: 507 TL 508
Score = 55.5 bits (132), Expect = 5e-08
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQ 258
C D +TCC +G CC Y VCC D HCCP G C +C+ +
Sbjct: 523 CHDNQTCCKDSAGVWACCPYLKGVCCRDGRHCCPGGFHCSARGTKCLRK 571
Score = 54.3 bits (129), Expect = 1e-07
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCIHQSNEPI 273
C +C + SG CC +S V CGD HCCP+G C K C S+ P+
Sbjct: 67 CPAGYSCLLTVSGTSSCCPFSKGVSCGDGYHCCPQGFHCSADGKSCFQMSDNPL 120
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/130 (24%), Positives = 50/130 (38%)
Frame = +1
Query: 31 NILQHVIAKTPGLLKENLNICQNGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCC 210
N ++ K PG + + + + C + TCC +G CC ++ AVCC D +HCC
Sbjct: 263 NYTTDLLTKLPGYPVKEVKC--DMEVSCPEGYTCCRLNTGAWGCCPFAKAVCCEDHIHCC 320
Query: 211 PEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNCP 390
P G C H E +++ K+ P + L+ D CP
Sbjct: 321 PAGFQC--------HTEKGTCEMGILQVPWMKKVIAPLRLPDPQILKS-DTPCDDFTRCP 371
Query: 391 DGGQCAGLQT 420
C L +
Sbjct: 372 TNNTCCKLNS 381
Score = 54.3 bits (129), Expect = 1e-07
Identities = 20/39 (51%), Positives = 21/39 (53%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTC 228
C TCC SG CC AVCC D HCCP+G TC
Sbjct: 370 CPTNNTCCKLNSGDWGCCPIPEAVCCSDNQHCCPQGFTC 408
>sp|P80059|PMD1_LOCMI Pars intercerebralis major peptide D1 (PMP-D1)
Length = 54
Score = 63.5 bits (153), Expect = 2e-10
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCI 252
C +TCC + G CC Y VCC D +HCCP GT CD ++RCI
Sbjct: 7 CPGTETCCTTPQGEEGCCPYKEGVCCLDGIHCCPSGTVCDEDHRRCI 53
>sp|P80930|ENA1_HORSE Antimicrobial peptide eNAP-1
Length = 46
Score = 59.3 bits (142), Expect = 3e-09
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEG 219
C D +TCC + GG CC YS VCC DQ HCCP G
Sbjct: 10 CHDXQTCCRASQGGXACCPYSQGVCCADQRHCCPVG 45
>sp|P81013|GRN1_CYPCA Granulin-1
Length = 57
Score = 53.5 bits (127), Expect = 2e-07
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +1
Query: 109 LCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCI 252
+C D TCC S G CC +S CC D +HCC G CD + C+
Sbjct: 9 ICPDGTTCCLSPYGVWYCCPFSMGQCCRDGIHCCRHGYHCDSTSTHCL 56
>sp|P81014|GRN2_CYPCA Granulin-2
Length = 57
Score = 50.1 bits (118), Expect = 2e-06
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 97 NGKALCGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCI 252
N + C + TCC S G CC + CC D HCC G CD + C+
Sbjct: 5 NARTTCPSRTTCCRSPFGVWYCCPFLMGQCCRDGRHCCRHGYRCDSTSTLCL 56
>sp|P81015|GRN3_CYPCA Granulin-3
Length = 57
Score = 45.8 bits (107), Expect = 4e-05
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQCCQYSNAVCCGDQLHCCPEGTTCDLVNKRCI 252
C TCC S G CC + CC D HCC G CD + C+
Sbjct: 10 CPSGTTCCRSPFGVWYCCPFLMGQCCRDGRHCCRHGYHCDSTSTLCL 56
>sp|P43297|RD21A_ARATH Cysteine proteinase RD21a precursor (RD21)
Length = 462
Score = 42.7 bits (99), Expect = 3e-04
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Frame = +1
Query: 112 CGDQKTCCASKSGGHQC-----CQYSNAVCCGDQLHCCP-EGTTCDLVNKRCIHQSNEP 270
C + TCC G C C A CC D CCP E CDL C+ N P
Sbjct: 381 CPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSP 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,765,263
Number of Sequences: 369166
Number of extensions: 1036742
Number of successful extensions: 3922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3851
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)