Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A08
(528 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein ... 222 4e-58
sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein ... 219 3e-57
sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein ... 216 2e-56
sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein ... 216 2e-56
sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein)... 216 4e-56
sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein ... 216 4e-56
sp|Q5R931|RL10_PONPY 60S ribosomal protein L10 214 8e-56
sp|Q08200|RL10_CHICK 60S ribosomal protein L10 (Jun-binding... 212 4e-55
sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like 212 5e-55
sp|P93847|RL10_SOLME 60S ribosomal protein L10 (EQM) 200 2e-51
>sp|Q09533|RL10_CAEEL 60S ribosomal protein L10 (QM protein homolog)
Length = 214
Score = 222 bits (566), Expect = 4e-58
Identities = 108/149 (72%), Positives = 122/149 (81%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VK+CGKD FHLRVR HP+HVTRINKMLSCAGADRLQTGMRGAYG
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQGLVARV IG +FS+R KE NV + +EAFRRAK KFPGRQ I S K+GFTKW +E+
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDRED 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELW 462
YER+R +G L DGV V+ + G L W
Sbjct: 181 YERMRAEGRLRSDGVGVQLQREHGPLTKW 209
>sp|O61231|RL10_DROME 60S ribosomal protein L10 (QM protein homolog) (dQM)
Length = 218
Score = 219 bits (558), Expect = 3e-57
Identities = 104/151 (68%), Positives = 119/151 (78%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEA RIC NKYLVK CGKD FH+R+R HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV+IGQPI SVR + ++EA RRAK KFPGRQKI +S K+GFTK+ +E
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWKK 468
YE LR D L PDG NVKY P+ G + W+K
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPEHGPIAAWEK 211
>sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 (QM protein homolog)
Length = 214
Score = 216 bits (551), Expect = 2e-56
Identities = 103/150 (68%), Positives = 121/150 (80%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWK 465
+E + + L PDG VKY+P +G L+ W+
Sbjct: 181 FENMVAEKRLIPDGCGVKYIPNRGPLDKWR 210
>sp|O96647|RL10_BOMMA 60S ribosomal protein L10 (QM protein homolog)
Length = 219
Score = 216 bits (551), Expect = 2e-56
Identities = 102/156 (65%), Positives = 126/156 (80%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEA RIC NKYLVK+CGKD FH+R+R HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV+IGQPI SVR + ++EA RRAK KFPGRQKI +S K+GFTK+ ++E
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWKKHKAHL 483
+E+LR++G L DG V+Y P+ G L+ W+K +A +
Sbjct: 181 FEKLREEGRLANDGCIVQYRPEHGPLDAWRKVQAEI 216
>sp|P27635|RL10_HUMAN 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM)
(Laminin receptor homolog)
Length = 214
Score = 216 bits (549), Expect = 4e-56
Identities = 103/150 (68%), Positives = 121/150 (80%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWK 465
+E + + L PDG VKY+P +G L+ W+
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWR 210
>sp|Q6ZWV3|RL10_MOUSE 60S ribosomal protein L10 (QM protein homolog)
sp|Q6PDV7|RL10_RAT 60S ribosomal protein L10
Length = 214
Score = 216 bits (549), Expect = 4e-56
Identities = 103/150 (68%), Positives = 121/150 (80%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWK 465
+E + + L PDG VKY+P +G L+ W+
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWR 210
>sp|Q5R931|RL10_PONPY 60S ribosomal protein L10
Length = 214
Score = 214 bits (546), Expect = 8e-56
Identities = 103/150 (68%), Positives = 120/150 (80%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWK 465
+E + + L PDG VKY P +G L+ W+
Sbjct: 181 FEDMVAEKRLIPDGCGVKYTPNRGPLDKWR 210
>sp|Q08200|RL10_CHICK 60S ribosomal protein L10 (Jun-binding protein JIF-1)
Length = 210
Score = 212 bits (540), Expect = 4e-55
Identities = 102/150 (68%), Positives = 119/150 (79%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VKSCGKD FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 56 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 115
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV +GQ I S+R K N ++VEA RRAK KFPGRQKI IS K+GFTK+ +
Sbjct: 116 KPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADA 175
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWK 465
+E + L PDG VKY+P +G L+ W+
Sbjct: 176 FEEMVAQKRLIPDGCGVKYVPGRGPLDRWR 205
>sp|Q96L21|RL10L_HUMAN 60S ribosomal protein L10-like
Length = 214
Score = 212 bits (539), Expect = 5e-55
Identities = 102/150 (68%), Positives = 119/150 (79%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARICANKY+VKSCG+D FH+RVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG VARV IGQ I S+R K N +++EA RRAK KFPGRQKI IS K+GFTK+ +E
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWK 465
+E + L PDG VKY+P G L+ W+
Sbjct: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWR 210
>sp|P93847|RL10_SOLME 60S ribosomal protein L10 (EQM)
Length = 219
Score = 200 bits (508), Expect = 2e-51
Identities = 99/156 (63%), Positives = 118/156 (75%)
Frame = +1
Query: 16 SSEALEAARICANKYLVKSCGKDAFHLRVRAHPYHVTRINKMLSCAGADRLQTGMRGAYG 195
SSEALEAARI NKY+ KS GKDAFHLRVR HP+HV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 196 KPQGLVARVKIGQPIFSVRGKEANVNNMVEAFRRAKMKFPGRQKIAISSKFGFTKWTKEE 375
KPQG+ ARV IGQ + SVR K+ N N+ EA RRAK KFPGRQKI +S K+GFTK+++ +
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTD 180
Query: 376 YERLRKDGTLYPDGVNVKYLPKKGSLELWKKHKAHL 483
Y + + + + PDGVN K L G L + +A L
Sbjct: 181 YLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,847,087
Number of Sequences: 369166
Number of extensions: 1131566
Number of successful extensions: 2974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2965
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)