Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P23
(374 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 121 6e-28
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 120 7e-28
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 120 7e-28
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 120 1e-27
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 120 1e-27
sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein) 119 2e-27
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 118 4e-27
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 117 8e-27
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 116 1e-26
sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein) 113 1e-25
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 121 bits (303), Expect = 6e-28
Identities = 58/112 (51%), Positives = 81/112 (72%)
Frame = +2
Query: 11 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 190
Q+KK +Y + +I+ IR M I E++ CD+KEVV KL DSIGKDI K CS ++PLQ
Sbjct: 147 QVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQ 206
Query: 191 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGEIIERPDGHEPPIQTSV 346
+ +RKVK+I++PK+DL +L DLHGDS T + + GE ++RPD +EPP+Q V
Sbjct: 207 EVYIRKVKIIKRPKVDLGRLHDLHGDSIT-VGADGEKVDRPDDYEPPVQQEV 257
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 120 bits (302), Expect = 7e-28
Identities = 59/118 (50%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+P
Sbjct: 143 NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYP 202
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 346
L D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 203 LHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 260
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 120 bits (302), Expect = 7e-28
Identities = 59/118 (50%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+P
Sbjct: 147 NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYP 206
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 346
L D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 207 LHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 120 bits (301), Expect = 1e-27
Identities = 59/118 (50%), Positives = 84/118 (71%), Gaps = 4/118 (3%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+P
Sbjct: 147 NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYP 206
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 346
L D VRKVK+++KPK +L KLM+LHG+ ++ +TG+ +ER DG+EPP+Q SV
Sbjct: 207 LHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYEPPVQESV 264
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 120 bits (300), Expect = 1e-27
Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 4/118 (3%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+P
Sbjct: 147 NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYP 206
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITSTGEIIERPDGHEPPIQTSV 346
L D VRKVK+++KPK +L KLM+LHG+ + A TG +ER DG+EPP+Q SV
Sbjct: 207 LHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPVQESV 264
>sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein)
Length = 268
Score = 119 bits (298), Expect = 2e-27
Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 5/115 (4%)
Frame = +2
Query: 17 KKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDC 196
+K YAQ Q++ IR M ++I E+S D+K++V KL +DSI KDI K C I+PL D
Sbjct: 154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDV 213
Query: 197 CVRKVKVIRKPKMDLTKLMDLHGDSA-----TAITSTGEIIERPDGHEPPIQTSV 346
+RKVKV++KP+ D++KL++LHGD ++S G +I+RP+G+EPP+Q SV
Sbjct: 214 YIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQESV 268
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 118 bits (296), Expect = 4e-27
Identities = 61/119 (51%), Positives = 84/119 (70%), Gaps = 5/119 (4%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q+KK YAQ Q+K+IR M E+++ E+SS D+KEVV KL DSIGKDI K C I+P
Sbjct: 147 NNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYP 206
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITST-GEIIERPDGHEPPIQTSV 346
L D + KVKV++KPK D+ KLM+LHG+ +T +TS GE ++R DG+EPP+ +V
Sbjct: 207 LHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYEPPVLQNV 265
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 117 bits (293), Expect = 8e-27
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q++K +YAQ QQ++ IR M E++ E + D+KEVV KL DSIGKDI K C I+P
Sbjct: 147 NNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYP 206
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 346
L D VRKVK+++KPK +L KLM+LHG+ A +G+ +ER DG+EPP+Q SV
Sbjct: 207 LHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYEPPVQESV 264
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 116 bits (291), Expect = 1e-26
Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 6/120 (5%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
+ Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DS+GKDI K C I+P
Sbjct: 147 NNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYP 206
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITS------TGEIIERPDGHEPPIQTSV 346
L D VRKVK+++KPK +L KLM+LHG+ + TG +ER DG+EPPIQ +V
Sbjct: 207 LHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYEPPIQETV 266
>sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein)
Length = 269
Score = 113 bits (283), Expect = 1e-25
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 6/120 (5%)
Frame = +2
Query: 5 STQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFP 184
S +K YAQ QIK+IR M +I EI+S D+K VV+KL DSI KDI K C ++P
Sbjct: 150 SMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYP 209
Query: 185 LQDCCVRKVKVIRKPKMDLTKLMDLHGDSA--TAITSTGE----IIERPDGHEPPIQTSV 346
L D +RKVKV++KP+ DL+ LM+LHGD A STG ++ RP+G+EPP+Q SV
Sbjct: 210 LHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVVRPEGYEPPVQASV 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,436,696
Number of Sequences: 369166
Number of extensions: 817502
Number of successful extensions: 2084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)