Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P20
(381 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 33 0.26
sp|Q876L3|ARE1_SACBA Sterol O-acyltransferase 1 (Sterol-est... 32 0.59
sp|Q9RLU5|ALR_LACLC Alanine racemase 30 1.3
sp|Q99Y98|ALR_STRP1 Alanine racemase 30 1.7
sp|Q5XAA4|ALR_STRP6 Alanine racemase >gi|23813643|sp|Q8NZK4... 30 1.7
sp|Q8K5Z8|ALR_STRP3 Alanine racemase 30 1.7
sp|P83618|RN28_PANGI Ribonuclease-like storage protein prec... 30 2.2
sp|O59851|MAT1_FUSOX Mating-type protein MAT-1 30 2.2
sp|Q9CH94|ALR_LACLA Alanine racemase 29 3.8
sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 28 6.5
>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3
Length = 1330
Score = 32.7 bits (73), Expect = 0.26
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = -1
Query: 357 TKLKKYCQK*VEYFDINLH*ETLTFLILDPNQ*NWCFEWIRFD*HHQQCILNYFVTYCTK 178
T Y QK + YF + L + +T+ D + W F+ C+LN FV+
Sbjct: 839 TVTSSYRQKLINYFTLQLSQDRVTWRSAD--ELPWLFQQQGSKQKLHDCLLNLFVSQNLY 896
Query: 177 FRELFVELTNHWKH*LYQYLGK 112
R F EL ++W Q++GK
Sbjct: 897 KRGHFAELLSYW-----QFVGK 913
>sp|Q876L3|ARE1_SACBA Sterol O-acyltransferase 1 (Sterol-ester synthase 1)
Length = 623
Score = 31.6 bits (70), Expect = 0.59
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 67 FVMSINT*NLFLKCLFPKILI*SVFPVIGQFHKKFT--KFCTISHKIIQNTLLMMLVKSY 240
F +I+ N F+ C+FP ++ +P ++ KFC I T+ +M+V +
Sbjct: 380 FPNNISCSNYFMFCMFPVLVYQINYPRTSHIRWRYVLEKFCAI-----MGTIFLMMVTAQ 434
Query: 241 PFKAPVSLIGIKY 279
F PV++ I+Y
Sbjct: 435 IFMHPVAMRCIEY 447
>sp|Q9RLU5|ALR_LACLC Alanine racemase
Length = 367
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 175 KFCTISHKIIQNTLLMMLVKSYPFKAPVSLIG 270
KFC I ++ + +++ L KSYP V+LIG
Sbjct: 300 KFCEIVGRVCMDQMMIKLDKSYPLGTKVTLIG 331
>sp|Q99Y98|ALR_STRP1 Alanine racemase
Length = 366
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 175 KFCTISHKIIQNTLLMMLVKSYPFKAPVSLIGIKYQK 285
+FC I ++ + L + L K+YP V+LIG QK
Sbjct: 300 QFCEIIGRVSMDQLTIRLPKAYPLGTKVTLIGSNQQK 336
>sp|Q5XAA4|ALR_STRP6 Alanine racemase
sp|Q8NZK4|ALR_STRP8 Alanine racemase
Length = 366
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 175 KFCTISHKIIQNTLLMMLVKSYPFKAPVSLIGIKYQK 285
+FC I ++ + L + L K+YP V+LIG QK
Sbjct: 300 QFCEIIGRVSMDQLTIRLSKAYPLGTKVTLIGSNQQK 336
>sp|Q8K5Z8|ALR_STRP3 Alanine racemase
Length = 366
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 175 KFCTISHKIIQNTLLMMLVKSYPFKAPVSLIGIKYQK 285
+FC I ++ + L + L K+YP V+LIG QK
Sbjct: 300 QFCEIIGRVSMDQLTIRLSKAYPLGTKVTLIGSNQQK 336
>sp|P83618|RN28_PANGI Ribonuclease-like storage protein precursor (Root 28 kDa major
protein)
Length = 238
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 168 VHEILYNKSQNNSEYIVDDVSQIVSIQSTSFID 266
V EI + K++N SEY++ D++ V+ Q+T F+D
Sbjct: 175 VPEIDFTKNEN-SEYVLTDINVCVNQQATRFVD 206
>sp|O59851|MAT1_FUSOX Mating-type protein MAT-1
Length = 357
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 120 DTDIISVSSDWSVPQKVHEILYNKSQNNSEYIV 218
DT II +SS WS+ Q +HE +K Q +Y +
Sbjct: 319 DTSIIDISSAWSIDQYLHE-KQSKMQQQCKYFL 350
>sp|Q9CH94|ALR_LACLA Alanine racemase
Length = 367
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 175 KFCTISHKIIQNTLLMMLVKSYPFKAPVSLIG 270
+FC I ++ + +++ L KSYP V+LIG
Sbjct: 300 EFCEIVGRVCMDQMMIKLDKSYPLGTKVTLIG 331
>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3
Length = 1300
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = -1
Query: 351 LKKYCQK*VEYFDINLH*ETLTFLILDPNQ*NWCFEWIRFD*HHQQCILNYFVTYCTKFR 172
+ +Y +K +++F L + +T+ D + W F+ +C++N FV+ R
Sbjct: 814 ISEYREKIIKHFTTQLSHDRVTWRSAD--ELTWLFQQQGEKQKLHKCLMNLFVSQNLYKR 871
Query: 171 ELFVELTNHWK 139
F EL ++W+
Sbjct: 872 GHFAELLSYWQ 882
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,995,925
Number of Sequences: 369166
Number of extensions: 670315
Number of successful extensions: 1419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)