Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P15
(273 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3B7|RM11_HUMAN 39S ribosomal protein L11, mitochondri... 51 7e-07
sp|P34264|RM11_CAEEL Probable 39S ribosomal protein L11, mi... 51 1e-06
sp|Q9CQF0|RM11_MOUSE 39S ribosomal protein L11, mitochondri... 50 1e-06
sp|Q9VFJ2|RM11_DROME 39S ribosomal protein L11, mitochondri... 42 6e-04
sp|P53875|RM19_YEAST 60S ribosomal protein L19, mitochondri... 34 0.12
sp|O67758|RL11_AQUAE 50S ribosomal protein L11 32 0.35
sp|Q14566|MCM6_HUMAN DNA replication licensing factor MCM6 ... 31 0.78
sp|P53332|YG5T_YEAST Hypothetical 34.3 kDa protein in TAF14... 29 3.0
sp|Q00329|RFBJ_SALMU CDP-abequose synthase 29 3.0
sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosome ... 28 8.6
>sp|Q9Y3B7|RM11_HUMAN 39S ribosomal protein L11, mitochondrial precursor (L11mt)
(MRP-L11)
Length = 192
Score = 51.2 bits (121), Expect = 7e-07
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 ACGAKKGSLDARVDPPGILSIKHIYEISKIRQEDINQRFR--PLEEICAETIKWCRVMGI 175
A G +KG+ + G++++KH+YEI++I+ +D + PL + I R +GI
Sbjct: 94 AAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGI 153
Query: 176 IIKKHVTSDEIDANLKRREVYLKEQEE 256
+ K ++S+E+ A K R ++L Q+E
Sbjct: 154 RVVKDLSSEELAAFQKERAIFLAAQKE 180
>sp|P34264|RM11_CAEEL Probable 39S ribosomal protein L11, mitochondrial precursor
Length = 195
Score = 50.8 bits (120), Expect = 1e-06
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Frame = +2
Query: 8 GAKKGSLDARVDPPGILSIKHIYEISKIRQEDINQRFRPLEEICAETIKWCRVMGIIIKK 187
G K S D V G L++KH+YEI+KI+ D + PLE+IC IK CR +GI ++
Sbjct: 101 GRGKASKDEIV---GKLTVKHLYEIAKIKSRDKALQHVPLEQICRMLIKTCRTLGIDVQY 157
Query: 188 H------------VTSDEIDANLK 223
H +++DA LK
Sbjct: 158 HDLDPVELKEFLVARKEKVDAQLK 181
>sp|Q9CQF0|RM11_MOUSE 39S ribosomal protein L11, mitochondrial precursor (L11mt)
(MRP-L11)
Length = 192
Score = 50.4 bits (119), Expect = 1e-06
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 ACGAKKGSLDARVDPPGILSIKHIYEISKIRQED--INQRFRPLEEICAETIKWCRVMGI 175
A G +KG+ + G++S+KH+YEI+ ++ +D + PL + I R +GI
Sbjct: 94 AAGIEKGARHTGKEVAGLVSLKHVYEIACVKAKDDAFAMQDVPLSSVVRSIIGSARSLGI 153
Query: 176 IIKKHVTSDEIDANLKRREVYLKEQEE 256
+ K ++++E++A K R V+L Q+E
Sbjct: 154 RVVKDLSAEELEAFQKERAVFLAAQKE 180
>sp|Q9VFJ2|RM11_DROME 39S ribosomal protein L11, mitochondrial precursor (L11mt)
Length = 196
Score = 41.6 bits (96), Expect = 6e-04
Identities = 19/83 (22%), Positives = 45/83 (54%)
Frame = +2
Query: 2 ACGAKKGSLDARVDPPGILSIKHIYEISKIRQEDINQRFRPLEEICAETIKWCRVMGIII 181
A G ++G++ + G++++KH+YEI+ I+ +D ++++C I R GI +
Sbjct: 98 AAGIQRGTMTPGKEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEMLISIARTCGIKV 157
Query: 182 KKHVTSDEIDANLKRREVYLKEQ 250
+ + L+ R++ +++Q
Sbjct: 158 VREIDPAAYGEFLEERKLIVEQQ 180
>sp|P53875|RM19_YEAST 60S ribosomal protein L19, mitochondrial precursor (YmL19)
Length = 158
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 50 GILSIKHIYEISKIRQEDINQRFRPLEEICAETIKWCRVMGI 175
G LS+KH+YEI+KI++ D +E I + + MGI
Sbjct: 113 GELSLKHVYEIAKIKKSDERHSLLEMEGIVKSIVGVAKSMGI 154
>sp|O67758|RL11_AQUAE 50S ribosomal protein L11
Length = 145
Score = 32.3 bits (72), Expect = 0.35
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 2 ACGAKKGSLDARVDPPGILSIKHIYEISKIRQEDINQR 115
A G +KGS D + G +++K + EI+K++ +D+N R
Sbjct: 83 AAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKDMNTR 120
>sp|Q14566|MCM6_HUMAN DNA replication licensing factor MCM6 (P105MCM)
Length = 821
Score = 31.2 bits (69), Expect = 0.78
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 98 EDINQRFRPLEEICAETIKWCRVMGIII--KKHVTSDEIDANLKRREV---YLKEQE 253
EDINQ P + ++CR+ +I+ + V +E ++ LKR E+ YLKE E
Sbjct: 701 EDINQESAPKASLRLGFSEYCRISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIE 757
>sp|P53332|YG5T_YEAST Hypothetical 34.3 kDa protein in TAF145-YOR1 intergenic region
Length = 305
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 65 KHIYEISKIRQEDINQRFRPLEEICAETIKWCRVMGIIIKKHVTSDEIDANLKRRE 232
+H+++ K+ + D++ PL ++C T K + +++ + S N R E
Sbjct: 200 RHVHQFIKLLKPDLSVELVPLRDVCGPTGKVPEIECLVVSRETVSGAETVNKTRIE 255
>sp|Q00329|RFBJ_SALMU CDP-abequose synthase
Length = 293
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +2
Query: 59 SIKHIYEISKIRQED------INQRFRPLEEICAETIKWCRVMGIIIKKHVTSDEIDANL 220
S +H E+SKI E+ IN R LE + E K +++ +IKK +++ID +
Sbjct: 133 SKRHFVELSKIYVEEHPDVCFINLR---LEHVYGERDKAGKIIPYVIKKMKNNEDIDCTI 189
Query: 221 KRRE 232
R++
Sbjct: 190 ARQK 193
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosome 1-like 1 protein (SMC1alpha
protein) (Chromosome segregation protein SmcB) (Sb1.8)
Length = 1233
Score = 27.7 bits (60), Expect = 8.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 95 QEDINQRFRPLEEICAETIKWCRVMGIIIKK-HVTSDEIDANLKRREVYLKEQEEIKK 265
Q+ +N+R L+ I A +K + + K TSDE +A KR + + E+IKK
Sbjct: 1007 QQKLNERQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKK 1064
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,464,622
Number of Sequences: 369166
Number of extensions: 535707
Number of successful extensions: 1661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)