Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P13-2
(298 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q57882|Y440_METJA Hypothetical protein MJ0440 31 0.99
sp|Q7V2R3|QUEA_PROMP S-adenosylmethionine:tRNA ribosyltrans... 30 2.2
sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5... 30 2.2
sp|P61038|LNT2_TREDE Apolipoprotein N-acyltransferase 2 (AL... 29 3.8
sp|Q9TC94|YMF16_NEPOL Hypothetical tatC-like protein ymf16 28 6.4
>sp|Q57882|Y440_METJA Hypothetical protein MJ0440
Length = 299
Score = 30.8 bits (68), Expect = 0.99
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 103 FLFLIFQSFVHQQFSIFVSLYIGIFQLSIKFL 198
FLF+ Q H + ++V + +GIF +KFL
Sbjct: 161 FLFVFLQHITHLEAILYVGILVGIFYYLVKFL 192
>sp|Q7V2R3|QUEA_PROMP S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine
biosynthesis protein queA)
Length = 374
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -1
Query: 199 QEI*LKVERFLYKAKQK*KTVDVQKIGKLRIEIRR*KIHENCREKEMKTNRYFKNLVD 26
+EI K+E + Y + T+ K K+R E R + ++ E++ TN+Y KNL+D
Sbjct: 8 EEIDHKLEAYDYILDE---TLIANKPSKVRHESRLMIVRDSSLEEDFTTNKYTKNLLD 62
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 590
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 143 FLFLFRFI*ESFNFQSNFLCFSLSLCIII 229
F +F FI SF F NFL F LSL +II
Sbjct: 8 FFIMFGFISGSFMFGRNFLSFWLSLVMII 36
>sp|P61038|LNT2_TREDE Apolipoprotein N-acyltransferase 2 (ALP N-acyltransferase 2)
Length = 525
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 103 FLFLIFQSFVHQQFSIFVSLY--IGIFQLSIKFLVFFFITL 219
FL+ F SFVH S +++ + IF L L +FFI +
Sbjct: 56 FLYGFFVSFVHLMSSFWLAFFEDFAIFTLGASTLAYFFIAM 96
>sp|Q9TC94|YMF16_NEPOL Hypothetical tatC-like protein ymf16
Length = 247
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 106 LFLIFQSFVHQQFSIFVSLYIGIFQLSIKFLVFFFITLYY 225
++ F F +Q ++ F+ +L ++FL FFF TL +
Sbjct: 77 IYCTFPYFFYQFWAFFIPSTYQFERLQLRFLSFFFFTLLF 116
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,777,864
Number of Sequences: 369166
Number of extensions: 437252
Number of successful extensions: 869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)