Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P05
(757 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 106 6e-23
sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, si... 93 7e-19
sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, si... 93 7e-19
sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, sign... 93 7e-19
sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, si... 93 7e-19
sp|O01367|HOW_DROME Held out wings protein (KH-domain prote... 62 1e-09
sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppres... 58 2e-08
sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chrom... 39 0.020
sp|Q10900|CTPI_MYCTU Probable cation-transporting ATPase I 37 0.044
sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein... 34 0.37
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33
Length = 308
Score = 106 bits (265), Expect = 6e-23
Identities = 55/111 (49%), Positives = 76/111 (68%), Gaps = 7/111 (6%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
LLGP G T+K +Q++T TK+SILG GS+R+ KE+EL NSGD KY HL ++LH++I SI
Sbjct: 94 LLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIA 153
Query: 182 NPSEAYYNISYALAEVKKVMIP--DPN-----EQAPGQMPMVTPLMGGPNP 313
+P+EA+ ++YAL E+KK + P DPN G M + +MGGP P
Sbjct: 154 SPAEAHARMAYALTEIKKYITPEEDPNYMMMAGHGAGPMMGMGGMMGGPGP 204
>sp|Q60749|SAM68_MOUSE KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 93.2 bits (230), Expect = 7e-19
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
+LGP G T+K +QE+T K+S+LG GS+R+ KE+EL GDPKY HL LH+ I+ G
Sbjct: 176 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 235
Query: 182 NPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMVTPLMGGPNPGFG 322
P EAY +++A+ EVKK ++PD ++ Q ++ L G P P G
Sbjct: 236 PPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q07666|SAM68_HUMAN KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 93.2 bits (230), Expect = 7e-19
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
+LGP G T+K +QE+T K+S+LG GS+R+ KE+EL GDPKY HL LH+ I+ G
Sbjct: 176 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 235
Query: 182 NPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMVTPLMGGPNPGFG 322
P EAY +++A+ EVKK ++PD ++ Q ++ L G P P G
Sbjct: 236 PPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q91V33|SAM68_RAT KH domain containing, RNA binding, signal transduction associated
protein 1 (p21 Ras GTPase-activating protein-associated
p62) (GAP-associated tyrosine phosphoprotein p62)
(Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
Length = 443
Score = 93.2 bits (230), Expect = 7e-19
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
+LGP G T+K +QE+T K+S+LG GS+R+ KE+EL GDPKY HL LH+ I+ G
Sbjct: 176 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 235
Query: 182 NPSEAYYNISYALAEVKKVMIPD-PNEQAPGQMPMVTPLMGGPNPGFG 322
P EAY +++A+ EVKK ++PD ++ Q ++ L G P P G
Sbjct: 236 PPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG 283
>sp|Q8UUW7|SAM68_CHICK KH domain containing, RNA binding, signal transduction associated
protein 1 (Src-associated in mitosis 68 kDa protein)
(Sam68)
Length = 433
Score = 93.2 bits (230), Expect = 7e-19
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
+LGP G T+K +QE+T K+S+LG GS+R+ KE+EL GDPKY HL LH+ I+ G
Sbjct: 159 ILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFG 218
Query: 182 NPSEAYYNISYALAEVKKVMIPDPNEQAPGQ----------MPMVTPLMGGPNPGFGAMR 331
P EAY +++A+ EVKK ++PD + + +P T GGP G GA
Sbjct: 219 PPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPTRGRGGPVRGRGAAP 278
Query: 332 TQP 340
P
Sbjct: 279 PPP 281
>sp|O01367|HOW_DROME Held out wings protein (KH-domain protein KH93F) (Putative
RNA-binding protein) (Muscle-specific protein) (Wings
held out protein) (Struthio protein) (Quaking-related
93F)
Length = 405
Score = 62.4 bits (150), Expect = 1e-09
Identities = 33/91 (36%), Positives = 54/91 (59%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
+LGP G T K ++++T K+ + G GS+R+ +KE N G P + HL D LH+ I
Sbjct: 157 ILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDA--NRGKPNWEHLSDDLHVLITVED 214
Query: 182 NPSEAYYNISYALAEVKKVMIPDPNEQAPGQ 274
+ A ++ A+AEV+K+++P QA G+
Sbjct: 215 TENRATVKLAQAVAEVQKLLVP----QAEGE 241
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 (Defective in germ
line development protein 1)
Length = 463
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
+LGP G T K +++ T K+ + G GS+R +K +E + G + HL D LH+ +
Sbjct: 225 ILGPRGMTAKQLEQDTGCKIMVRGKGSMR--DKSKESAHRGKANWEHLEDDLHVLVQCED 282
Query: 182 NPSEAYYNISYALAEVKKVMIPDP 253
+ + + AL +VKK++IP P
Sbjct: 283 TENRVHIKLQAALEQVKKLLIPAP 306
>sp|P42083|YKCA_CAEEL Hypothetical protein B0280.11 in chromosome III
Length = 634
Score = 38.5 bits (88), Expect = 0.020
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIG 181
L+GP G T++ +++ K+ I G G ++ KE+ L + HL++ +H+ I
Sbjct: 533 LIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRER--VGWEHLKEPIHVMISVRS 590
Query: 182 NPSEAYYNISYALAEVKKVM 241
+ EA S L+ +KK++
Sbjct: 591 DSEEA---ASEKLSSIKKML 607
>sp|Q10900|CTPI_MYCTU Probable cation-transporting ATPase I
Length = 1625
Score = 37.4 bits (85), Expect = 0.044
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +2
Query: 50 NTKMSILGAGSLRNPEKEQELLNSGDPKYNHLRDRLHLQIDSIGNPSEAYYNISYALAEV 229
NT +L G+LR ++ + ++ G R LH Q D G + Y ++ AL
Sbjct: 403 NTGQLVLDPGALRRLDRVRVVVIDGAALRGDNRAVLHAQGDEPGWDDDRVYEVADALLHG 462
Query: 230 KKVMIPDPNE---------QAPGQMPMVTPLMG 301
++ PDP+E AP Q P TP G
Sbjct: 463 EQAPEPDPDELPATGARLRWAPAQGPSATPAQG 495
>sp|Q15637|SF01_HUMAN Splicing factor 1 (Zinc finger protein 162) (Transcription factor
ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch
point binding protein mBBP) (BBP)
Length = 639
Score = 34.3 bits (77), Expect = 0.37
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Frame = +2
Query: 2 LLGPAGKTLKTVQEQTNTKMSILGAGSLRNPE---KEQELLNSGDPKYNHLRDRLHLQID 172
L+GP G TLK ++++ N K+ I G GS++ + K+ ++L D + LH +
Sbjct: 156 LIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGED-------EPLHALVT 208
Query: 173 SIGNPSEAYYNISYALAEVKKVM---IPDPNEQ 262
+ N E N+ A+ +++ ++ I P +Q
Sbjct: 209 A--NTME---NVKKAVEQIRNILKQGIETPEDQ 236
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,125,665
Number of Sequences: 369166
Number of extensions: 1597927
Number of successful extensions: 3921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3914
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)