Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_N17
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13804|ETFA_HUMAN Electron transfer flavoprotein alpha-s... 150 1e-36
sp|Q8HXY0|ETFA_MACFA Electron transfer flavoprotein alpha-s... 150 1e-36
sp|Q99LC5|ETFA_MOUSE Electron transfer flavoprotein alpha-s... 148 3e-36
sp|Q5RC31|ETFA_PONPY Electron transfer flavoprotein alpha-s... 147 6e-36
sp|P13803|ETFA_RAT Electron transfer flavoprotein alpha-sub... 147 6e-36
sp|Q93615|ETFA_CAEEL Probable electron transfer flavoprotei... 146 2e-35
sp|P38974|ETFA_PARDE Electron transfer flavoprotein alpha-s... 137 6e-33
sp|P53573|ETFA_BRAJA Electron transfer flavoprotein alpha-s... 134 5e-32
sp|Q8J112|ETFA_CRYNV Probable electron transfer flavoprotei... 126 2e-29
sp|Q5Y223|ETFA_CRYGA Probable electron transfer flavoprotei... 125 2e-29
>sp|P13804|ETFA_HUMAN Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 150 bits (378), Expect = 1e-36
Identities = 73/101 (72%), Positives = 84/101 (83%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F++LY+LAD+L+ +VPNDMQVGQTGKIVAPELY+A+GISGAIQHLAGM
Sbjct: 231 FKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGM 290
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTMLK 318
KDSK IVAINKDPEAPIFQVADYG+V DLFK VP+MT +LK
Sbjct: 291 KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 331
>sp|Q8HXY0|ETFA_MACFA Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 150 bits (378), Expect = 1e-36
Identities = 73/101 (72%), Positives = 84/101 (83%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F++LY+LAD+L+ +VPNDMQVGQTGKIVAPELY+A+GISGAIQHLAGM
Sbjct: 231 FKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGM 290
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTMLK 318
KDSK IVAINKDPEAPIFQVADYG+V DLFK VP+MT +LK
Sbjct: 291 KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 331
>sp|Q99LC5|ETFA_MOUSE Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 148 bits (374), Expect = 3e-36
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F++LY+LAD+L+ +VPNDMQVGQTGKIVAPELY+A+GISGAIQHL GM
Sbjct: 231 FKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLTGM 290
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTMLK 318
KDSK IVAINKDPEAPIFQVADYG+V DLFK VP+MT +LK
Sbjct: 291 KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 331
>sp|Q5RC31|ETFA_PONPY Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 147 bits (372), Expect = 6e-36
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F++LY+LAD+ + +VPNDMQVGQTGKIVAPELY+A+GISGAIQHLAGM
Sbjct: 231 FKLLYDLADQRHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGM 290
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTMLK 318
KDSK IVAINKDPEAPIFQVADYG+V DLFK VP+MT +LK
Sbjct: 291 KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 331
>sp|P13803|ETFA_RAT Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 147 bits (372), Expect = 6e-36
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F++ Y+LAD+L+ +VPNDMQVGQTGKIVAPELY+A+GISGAIQHLAGM
Sbjct: 231 FKLQYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGM 290
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTMLK 318
KDSK IVAINKDPEAPIFQVADYG+V DLFK VP+MT +LK
Sbjct: 291 KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 331
>sp|Q93615|ETFA_CAEEL Probable electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF)
Length = 332
Score = 146 bits (368), Expect = 2e-35
Identities = 73/100 (73%), Positives = 81/100 (81%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F+++Y+LADKL YVPNDMQVGQTGKIVAPELY+AIGISGAIQHLAGM
Sbjct: 232 FKLIYDLADKLGAGVGASRAAVDAGYVPNDMQVGQTGKIVAPELYIAIGISGAIQHLAGM 291
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTML 315
KDSKVIVAINKDP+APIFQVAD GL DLFKAVP++T L
Sbjct: 292 KDSKVIVAINKDPDAPIFQVADIGLKADLFKAVPELTAAL 331
>sp|P38974|ETFA_PARDE Electron transfer flavoprotein alpha-subunit (Alpha-ETF) (Electron
transfer flavoprotein large subunit) (ETFLS)
Length = 308
Score = 137 bits (346), Expect = 6e-33
Identities = 70/100 (70%), Positives = 76/100 (76%)
Frame = +1
Query: 16 FRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAGM 195
F I+ ELADKL Y PND QVGQTGK+VAPELYVA+GISGAIQHLAGM
Sbjct: 209 FAIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGM 268
Query: 196 KDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTML 315
KDSKVIVAINKD EAPIFQ+ADYGLV DLF VP++T L
Sbjct: 269 KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 308
>sp|P53573|ETFA_BRAJA Electron transfer flavoprotein alpha-subunit (Alpha-ETF) (Electron
transfer flavoprotein large subunit) (ETFLS)
Length = 314
Score = 134 bits (338), Expect = 5e-32
Identities = 68/101 (67%), Positives = 77/101 (76%)
Frame = +1
Query: 13 FFRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAG 192
F + + LADKL Y PND QVGQTGK+VAPELYVA+GISGAIQHLAG
Sbjct: 209 FAKYIEPLADKLGAGVGASRAAVDAGYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAG 268
Query: 193 MKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTML 315
MKDSKVIVAINKD +APIFQVADYGLV DL++AVP++T L
Sbjct: 269 MKDSKVIVAINKDEDAPIFQVADYGLVADLYQAVPELTAEL 309
>sp|Q8J112|ETFA_CRYNV Probable electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF)
Length = 346
Score = 126 bits (316), Expect = 2e-29
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = +1
Query: 13 FFRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAG 192
F +IL LAD L Y N +QVGQTGK+VAPELYVA+GISGAIQHLAG
Sbjct: 241 FDKILDPLADSLGAAVGASRAAVDAGYADNSLQVGQTGKVVAPELYVAVGISGAIQHLAG 300
Query: 193 MKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQM 303
MK+SK+IVAINKDP+APIFQVAD GLV DLF++VPQ+
Sbjct: 301 MKESKMIVAINKDPDAPIFQVADVGLVADLFESVPQL 337
>sp|Q5Y223|ETFA_CRYGA Probable electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF)
Length = 346
Score = 125 bits (315), Expect = 2e-29
Identities = 65/101 (64%), Positives = 74/101 (73%)
Frame = +1
Query: 13 FFRILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQTGKIVAPELYVAIGISGAIQHLAG 192
F IL LAD L Y N +QVGQTGK+VAPELYVAIGISGAIQHLAG
Sbjct: 241 FDAILNPLADSLGAAVGASRAAVDAGYADNSLQVGQTGKVVAPELYVAIGISGAIQHLAG 300
Query: 193 MKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQMTTML 315
MK+SK+I+AINKDP+APIFQVAD GLV DLF++VPQ+ L
Sbjct: 301 MKESKMIIAINKDPDAPIFQVADVGLVADLFESVPQLVKEL 341
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,705,698
Number of Sequences: 369166
Number of extensions: 635445
Number of successful extensions: 1296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)