Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_N07
(371 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase ... 66 3e-11
sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase ... 65 5e-11
sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147 39 0.003
sp|P61682|MURC_RHOPA UDP-N-acetylmuramate--L-alanine ligase... 28 6.6
sp|P30355|FLAP_MOUSE 5-lipoxygenase-activating protein (FLA... 28 8.6
sp|P20291|FLAP_RAT 5-lipoxygenase-activating protein (FLAP)... 28 8.6
>sp|O14880|MGST3_HUMAN Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 152
Score = 65.9 bits (159), Expect = 3e-11
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +1
Query: 1 MYSKDSKT---FNCIQRVHQNYVETVPFFWLVLFLGGFQNPKLAAIFGGAFIVSRIIYSL 171
MYS D + FNCIQR HQN +E P F L +GG +P++A+ G A+IV R++Y+
Sbjct: 43 MYSTDPENGHIFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAY 102
Query: 172 GYSSGIADKRRPGA 213
GY +G KR GA
Sbjct: 103 GYYTGEPSKRSRGA 116
>sp|Q9CPU4|MGST3_MOUSE Microsomal glutathione S-transferase 3 (Microsomal GST-3)
(Microsomal GST-III)
Length = 153
Score = 65.1 bits (157), Expect = 5e-11
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +1
Query: 1 MYSKDSKT---FNCIQRVHQNYVETVPFFWLVLFLGGFQNPKLAAIFGGAFIVSRIIYSL 171
MYS D + FNCIQR HQN +E P F L +GG +P++A+ G A+I+ R++Y+
Sbjct: 43 MYSTDPENGHMFNCIQRAHQNTLEVYPPFLFFLTVGGVYHPRIASGLGLAWIIGRVLYAY 102
Query: 172 GYSSGIADKRRPGA 213
GY +G KR GA
Sbjct: 103 GYYTGDPSKRYRGA 116
>sp|P73795|Y1147_SYNY3 Hypothetical protein sll1147
Length = 137
Score = 39.3 bits (90), Expect = 0.003
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 16 SKTFNCIQRVHQNYVETVPFFWLVLFLGG-FQNPKLAAIFGGAFIVSRIIYSLGYSSGIA 192
++ F + RV N +E + FF L+L +++P +AAI G +++ RI+Y+ GY A
Sbjct: 44 NEDFERVLRVQYNTLEQLAFFLPGLWLFAIYRDPTIAAILGAVWLLGRILYAWGYYQA-A 102
Query: 193 DKRRPG 210
+KR G
Sbjct: 103 EKRMVG 108
>sp|P61682|MURC_RHOPA UDP-N-acetylmuramate--L-alanine ligase
(UDP-N-acetylmuramoyl-L-alanine synthetase)
Length = 467
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 19 KTFNCIQRVHQNYVETVPFF 78
KTF+ +Q +N+VE VPF+
Sbjct: 192 KTFDAVQDAFRNFVENVPFY 211
>sp|P30355|FLAP_MOUSE 5-lipoxygenase-activating protein (FLAP) (MK-886-binding protein)
Length = 161
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 FNCIQRVHQNYVETVPFFWLVLFLGGFQNPKLAAIFGG-AFIVSRIIYSLGY 177
F + +QN V+ P F +VL+ G ++ A F G ++ R Y +GY
Sbjct: 50 FERVYTANQNCVDAYPTFLVVLWTAGLLCSQVPAAFAGLMYLFVRQKYFVGY 101
>sp|P20291|FLAP_RAT 5-lipoxygenase-activating protein (FLAP) (MK-886-binding protein)
Length = 161
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 25 FNCIQRVHQNYVETVPFFWLVLFLGGFQNPKLAAIFGG-AFIVSRIIYSLGY 177
F + +QN V+ P F +VL+ G ++ A F G ++ R Y +GY
Sbjct: 50 FERVYTANQNCVDAYPTFLVVLWTAGLLCSQVPAAFAGLMYLFVRQKYFVGY 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,592,954
Number of Sequences: 369166
Number of extensions: 684531
Number of successful extensions: 1249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)