Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M18
(205 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z0K7|SLUR1_MOUSE Secreted Ly-6/uPAR related protein 1 ... 31 1.0
sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 (Kera... 30 1.7
sp|P61050|LYNX1_MACMU Ly-6/neurotoxin-like protein 1 precursor 30 2.3
sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 (Kera... 30 2.3
sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 (Kera... 30 2.3
sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 (Kera... 29 3.9
sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 (Ker... 29 3.9
sp|P35456|UPAR_MOUSE Urokinase plasminogen activator surfac... 28 5.0
sp|P60413|KR10C_HUMAN Keratin-associated protein 10-12 (Ker... 28 5.0
sp|P60411|KR109_HUMAN Keratin-associated protein 10-9 (Kera... 28 5.0
>sp|Q9Z0K7|SLUR1_MOUSE Secreted Ly-6/uPAR related protein 1 precursor (SLURP-1) (ARS
component B)
Length = 110
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = +2
Query: 47 RYCASSCTPTNYDG-----NTSCCYSSFCNSG 127
R C+SSC T+ DG CC+ CNSG
Sbjct: 71 RSCSSSCLATDPDGIGVAHPVFCCFRDLCNSG 102
>sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 (Keratin-associated protein 10.6)
(High sulfur keratin-associated protein 10.6)
(Keratin-associated protein 18-6) (Keratin-associated
protein 18.6)
Length = 365
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C + PS Q C SSCTP SCC S C
Sbjct: 187 CQAVCEPSPCQSGCTSSCTP-------SCCQQSSC 214
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 68 CPVTCEPSPCQSGCTSSCTP-------SCCQQSSC 95
>sp|P61050|LYNX1_MACMU Ly-6/neurotoxin-like protein 1 precursor
Length = 118
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Frame = +2
Query: 53 CASSCTPTNYDG------NTSCCYSSFCNS 124
C SC T YDG TSCC CNS
Sbjct: 66 CVPSCFETVYDGYSKHASTTSCCQYDLCNS 95
>sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 (Keratin-associated protein 10.4)
(High sulfur keratin-associated protein 10.4)
(Keratin-associated protein 18-4) (Keratin-associated
protein 18.4)
Length = 401
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C + PS Q C SSCTP SCC S C
Sbjct: 187 CQAVCEPSPCQSGCISSCTP-------SCCQQSSC 214
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 68 CPVTCEPSPCQSGCTSSCTP-------SCCQQSSC 95
>sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 (Keratin-associated protein 10.7)
(High sulfur keratin-associated protein 10.7)
(Keratin-associated protein 18-7) (Keratin-associated
protein 18.7)
Length = 370
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C + PS Q C SSCTP SCC S C
Sbjct: 187 CQAVCEPSPCQSGCISSCTP-------SCCQQSSC 214
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 68 CRVTCEPSPCQSGCTSSCTP-------SCCQQSSC 95
>sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 (Keratin-associated protein 10.2)
(High sulfur keratin-associated protein 10.2)
(Keratin-associated protein 18-2) (Keratin-associated
protein 18.2)
Length = 255
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 58 CQAACEPSACQSGCTSSCTP-------SCCQQSSC 85
>sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 (Keratin-associated protein 10.11)
(High sulfur keratin-associated protein 10.11)
(Keratin-associated protein 18-11) (Keratin-associated
protein 18.11)
Length = 298
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 58 CQAACEPSACQSGCTSSCTP-------SCCQQSSC 85
>sp|P35456|UPAR_MOUSE Urokinase plasminogen activator surface receptor, GPI-anchored form
precursor (uPAR) (U-PAR) (CD87 antigen)
Length = 327
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Frame = +2
Query: 35 SYTQRYCASSCT----------PTNYDGNTSCCYSSFCNS 124
SYT R CA++ PT+ + + SCC+ S CNS
Sbjct: 256 SYTVRGCATASWCQGSHVADSFPTHLNVSVSCCHGSGCNS 295
>sp|P60413|KR10C_HUMAN Keratin-associated protein 10-12 (Keratin-associated protein 10.12)
(High sulfur keratin-associated protein 10.12)
(Keratin-associated protein 18-12) (Keratin-associated
protein 18.12)
Length = 245
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 63 CRVTCEPSPCQSGCTSSCTP-------SCCQQSSC 90
>sp|P60411|KR109_HUMAN Keratin-associated protein 10-9 (Keratin-associated protein 10.9)
(High sulfur keratin-associated protein 10.9)
(Keratin-associated protein 18-9) (Keratin-associated
protein 18.9)
Length = 292
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 14 CATIDYPSYTQRYCASSCTPTNYDGNTSCCYSSFC 118
C PS Q C SSCTP SCC S C
Sbjct: 58 CQVTCEPSPCQSGCTSSCTP-------SCCQQSSC 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,617,015
Number of Sequences: 369166
Number of extensions: 204168
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)