Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M14
(618 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51644|ARF4_XENLA ADP-ribosylation factor 4 311 1e-84
sp|P51823|ARF_ORYSA ADP-ribosylation factor 309 3e-84
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 306 3e-83
sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 306 3e-83
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like 306 4e-83
sp|P84083|ARF5_RAT ADP-ribosylation factor 5 >gi|51316989|s... 305 6e-83
sp|O48920|ARF_VIGUN ADP-ribosylation factor 305 6e-83
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 305 8e-83
sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 304 1e-82
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 304 1e-82
>sp|P51644|ARF4_XENLA ADP-ribosylation factor 4
Length = 180
Score = 311 bits (796), Expect = 1e-84
Identities = 149/177 (84%), Positives = 163/177 (92%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
T+SSLF+RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI F
Sbjct: 4 TISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRERI EAA+EL KML+ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+ +E+TDKL L LR RTWY+Q +CA G GLYEGLDWLSNEL K+
Sbjct: 124 FANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>sp|P51823|ARF_ORYSA ADP-ribosylation factor
Length = 181
Score = 309 bits (792), Expect = 3e-84
Identities = 149/177 (84%), Positives = 161/177 (90%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
T + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRER+ EA DELH+ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 306 bits (784), Expect = 3e-83
Identities = 148/171 (86%), Positives = 158/171 (92%)
Frame = +1
Query: 19 NRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 198
+RLFGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct: 10 SRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
Query: 199 GQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILVFANKQD 378
GQDKIRPLWRHYFQNTQG+IFV+DSNDRER+ EA DELH+ML ED+LRDAV+LVFANKQD
Sbjct: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQD 129
Query: 379 LPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
LPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN L K
Sbjct: 130 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180
>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1
Length = 181
Score = 306 bits (784), Expect = 3e-83
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
+ LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 SFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 1-like
Length = 181
Score = 306 bits (783), Expect = 4e-83
Identities = 147/177 (83%), Positives = 161/177 (90%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
+ + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 SFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180
>sp|P84083|ARF5_RAT ADP-ribosylation factor 5
sp|P84084|ARF5_MOUSE ADP-ribosylation factor 5
sp|P84085|ARF5_HUMAN ADP-ribosylation factor 5
Length = 180
Score = 305 bits (781), Expect = 6e-83
Identities = 143/177 (80%), Positives = 163/177 (92%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
T+S+LF+R+FGKK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI F
Sbjct: 4 TVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDRER+ E+ADEL KML+ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQD+PNAM +E+TDKL L +LR RTWY+Q +CA G GLY+GLDWLS+EL K+
Sbjct: 124 FANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>sp|O48920|ARF_VIGUN ADP-ribosylation factor
Length = 181
Score = 305 bits (781), Expect = 6e-83
Identities = 146/177 (82%), Positives = 161/177 (90%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
+ + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGL+WLSN + K
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180
>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1
Length = 181
Score = 305 bits (780), Expect = 8e-83
Identities = 146/177 (82%), Positives = 159/177 (89%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
+ + L RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 SFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180
>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1
Length = 181
Score = 304 bits (779), Expect = 1e-82
Identities = 146/177 (82%), Positives = 160/177 (90%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
+ + LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R+ EA DELH+ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNELGKK 531
FANKQDLPNAM+AAEI DKL LH+LR R WYIQ +CA SG GLYEGLDWLSN + K
Sbjct: 124 FANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 304 bits (778), Expect = 1e-82
Identities = 146/174 (83%), Positives = 162/174 (93%)
Frame = +1
Query: 1 TMSSLFNRLFGKKSMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 180
T+S LF+RLF KK MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF
Sbjct: 4 TISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 181 TVWDVGGQDKIRPLWRHYFQNTQGVIFVIDSNDRERISEAADELHKMLEEDDLRDAVILV 360
TVWDVGGQDKIRPLWRHYFQNTQG+IFV+DSNDR+R++EA +EL +ML ED+LRDAV+LV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLV 123
Query: 361 FANKQDLPNAMSAAEITDKLRLHNLRGRTWYIQQSCAASGAGLYEGLDWLSNEL 522
FANKQDLPNAM+AAEITDKL LH+LR R WYIQ +CA SG GLYEGLDWLSN++
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQI 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,710,072
Number of Sequences: 369166
Number of extensions: 1306326
Number of successful extensions: 4918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4850
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)