Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M12
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 327 3e-89
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 326 5e-89
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 324 1e-88
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 323 2e-88
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 323 3e-88
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 322 5e-88
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 322 9e-88
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 321 1e-87
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 320 2e-87
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 320 3e-87
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 327 bits (837), Expect = 3e-89
Identities = 160/215 (74%), Positives = 182/215 (84%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFV+GVNHEKY+ SL +VSNASCTTNCLAPLAKV+ND+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVVGVNHEKYENSLKVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
+TATQKTVDGPS KLWRDGRGA QNIIP IPELNGKITGMAFRVP P+V
Sbjct: 179 FTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYD+IKAAIK ASE MKGIL YT+++VVS DF GD +SSIFDA AG
Sbjct: 239 SVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 299 IALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 326 bits (835), Expect = 5e-89
Identities = 159/215 (73%), Positives = 180/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AG
Sbjct: 239 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 324 bits (831), Expect = 1e-88
Identities = 159/215 (73%), Positives = 181/215 (84%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYD+IK +K A++ +KGILAYTE++VVS DF GD +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 323 bits (829), Expect = 2e-88
Identities = 158/215 (73%), Positives = 179/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 323 bits (828), Expect = 3e-88
Identities = 158/215 (73%), Positives = 180/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYD+IK +K A+E +KGIL YTE++VVS DF GD +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 322 bits (826), Expect = 5e-88
Identities = 157/215 (73%), Positives = 180/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS K+WRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF D +SS FDA AG
Sbjct: 239 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKL++WYDNE+GYS RV+DL+ +M++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 322 bits (824), Expect = 9e-88
Identities = 157/215 (73%), Positives = 179/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKY+ +L IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 108 ISAPSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 167
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 168 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 227
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYDEIK +K ASE +KGIL YTE++VVS DF D +SS FDA AG
Sbjct: 228 SVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 287
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 288 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 321 bits (823), Expect = 1e-87
Identities = 157/215 (73%), Positives = 180/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYD+IK +K A++ +KGIL YTE++VVS DF GD +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 320 bits (821), Expect = 2e-87
Identities = 157/215 (73%), Positives = 178/215 (82%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPS DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSXDAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+KAAKYD+IK +K ASE +KGIL YTE++VVS DF +SS FDA AG
Sbjct: 239 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 320 bits (819), Expect = 3e-87
Identities = 156/215 (72%), Positives = 179/215 (83%)
Frame = +1
Query: 1 ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178
Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
TATQKTVDGPS KLWRDGRGAAQNIIP IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
SVVDLTC+L+K AKYD+IK +K ASE +KGIL YTE++VVS DF + +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAG 298
Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
I L D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 299 IALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,262,471
Number of Sequences: 369166
Number of extensions: 1582413
Number of successful extensions: 4252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)