Planarian EST Database


Dr_sW_027_M12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_027_M12
         (754 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51469|G3P_XENLA  Glyceraldehyde-3-phosphate dehydrogenas...   327   3e-89
sp|Q9N2D5|G3P_FELCA  Glyceraldehyde-3-phosphate dehydrogenas...   326   5e-89
sp|O57479|G3P_COLLI  Glyceraldehyde-3-phosphate dehydrogenas...   324   1e-88
sp|P00355|G3P_PIG  Glyceraldehyde-3-phosphate dehydrogenase ...   323   2e-88
sp|Q05025|G3P_COTJA  Glyceraldehyde-3-phosphate dehydrogenas...   323   3e-88
sp|Q28259|G3P_CANFA  Glyceraldehyde-3-phosphate dehydrogenas...   322   5e-88
sp|Q28554|G3P_SHEEP  Glyceraldehyde-3-phosphate dehydrogenas...   322   9e-88
sp|P00356|G3P_CHICK  Glyceraldehyde-3-phosphate dehydrogenas...   321   1e-87
sp|P46406|G3P_RABIT  Glyceraldehyde-3-phosphate dehydrogenas...   320   2e-87
sp|P16858|G3P_MOUSE  Glyceraldehyde-3-phosphate dehydrogenas...   320   3e-87
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  327 bits (837), Expect = 3e-89
 Identities = 160/215 (74%), Positives = 182/215 (84%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFV+GVNHEKY+ SL +VSNASCTTNCLAPLAKV+ND+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVVGVNHEKYENSLKVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
           +TATQKTVDGPS KLWRDGRGA QNIIP            IPELNGKITGMAFRVP P+V
Sbjct: 179 FTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKITGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYD+IKAAIK ASE  MKGIL YT+++VVS DF GD +SSIFDA AG
Sbjct: 239 SVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L + FVKLV+WYDNE GYS RV+DL+ HM++K+
Sbjct: 299 IALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  326 bits (835), Expect = 5e-89
 Identities = 159/215 (73%), Positives = 180/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+KAAKYD+IK  +K ASE  +KGIL YTE++VVS DF  D +SS FDA AG
Sbjct: 239 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  324 bits (831), Expect = 1e-88
 Identities = 159/215 (73%), Positives = 181/215 (84%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYD+IK  +K A++  +KGILAYTE++VVS DF GD +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKLV+WYDNEYGYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  323 bits (829), Expect = 2e-88
 Identities = 158/215 (73%), Positives = 179/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYD+IK  +K ASE  +KGIL YTE++VVS DF  D +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  323 bits (828), Expect = 3e-88
 Identities = 158/215 (73%), Positives = 180/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYD+IK  +K A+E  +KGIL YTE++VVS DF GD +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  322 bits (826), Expect = 5e-88
 Identities = 157/215 (73%), Positives = 180/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS K+WRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+KAAKYD+IK  +K ASE  +KGIL YTE++VVS DF  D +SS FDA AG
Sbjct: 239 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKL++WYDNE+GYS RV+DL+ +M++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 322

 Score =  322 bits (824), Expect = 9e-88
 Identities = 157/215 (73%), Positives = 179/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKY+ +L IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 108 ISAPSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 167

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 168 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 227

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYDEIK  +K ASE  +KGIL YTE++VVS DF  D +SS FDA AG
Sbjct: 228 SVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 287

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 288 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  321 bits (823), Expect = 1e-87
 Identities = 157/215 (73%), Positives = 180/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDKSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYD+IK  +K A++  +KGIL YTE++VVS DF GD +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKLV+WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  320 bits (821), Expect = 2e-87
 Identities = 157/215 (73%), Positives = 178/215 (82%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPS DAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++DHFGI EGLMTT+HA
Sbjct: 119 ISAPSXDAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+KAAKYD+IK  +K ASE  +KGIL YTE++VVS DF    +SS FDA AG
Sbjct: 239 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKL++WYDNE+GYS RV+DL+ HM++K+
Sbjct: 299 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
          Length = 333

 Score =  320 bits (819), Expect = 3e-87
 Identities = 156/215 (72%), Positives = 179/215 (83%)
 Frame = +1

Query: 1   ISAPSADAPMFVMGVNHEKYDPSLSIVSNASCTTNCLAPLAKVVNDHFGIEEGLMTTIHA 180
           ISAPSADAPMFVMGVNHEKYD SL IVSNASCTTNCLAPLAKV++D+FGI EGLMTT+HA
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 178

Query: 181 YTATQKTVDGPSSKLWRDGRGAAQNIIPXXXXXXXXXXXXIPELNGKITGMAFRVPVPDV 360
            TATQKTVDGPS KLWRDGRGAAQNIIP            IPELNGK+TGMAFRVP P+V
Sbjct: 179 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238

Query: 361 SVVDLTCKLKKAAKYDEIKAAIKHASETTMKGILAYTEEEVVSQDFKGDHNSSIFDAKAG 540
           SVVDLTC+L+K AKYD+IK  +K ASE  +KGIL YTE++VVS DF  + +SS FDA AG
Sbjct: 239 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAG 298

Query: 541 IQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMSTKD 645
           I L D FVKL++WYDNEYGYS RV+DL+ +M++K+
Sbjct: 299 IALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,262,471
Number of Sequences: 369166
Number of extensions: 1582413
Number of successful extensions: 4252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)