Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M08
(848 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATP... 375 e-104
sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATP... 375 e-104
sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPas... 375 e-104
sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPas... 375 e-104
sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATP... 374 e-103
sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum AT... 372 e-103
sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum AT... 370 e-102
sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homo... 344 2e-94
sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog 343 3e-94
sp|Q9SCN8|CD48D_ARATH Putative cell division control protei... 342 8e-94
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 375 bits (964), Expect = e-104
Identities = 188/242 (77%), Positives = 208/242 (85%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLD
Sbjct: 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIR
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQ
Sbjct: 701 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Query: 723 TL 728
TL
Sbjct: 761 TL 762
Score = 147 bits (371), Expect = 4e-35
Identities = 77/181 (42%), Positives = 113/181 (62%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D
Sbjct: 308 AIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD 364
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ + I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR
Sbjct: 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Query: 543 E 545
+
Sbjct: 425 K 425
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 375 bits (964), Expect = e-104
Identities = 188/242 (77%), Positives = 208/242 (85%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLD
Sbjct: 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIR
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQ
Sbjct: 701 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Query: 723 TL 728
TL
Sbjct: 761 TL 762
Score = 147 bits (371), Expect = 4e-35
Identities = 77/181 (42%), Positives = 113/181 (62%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D
Sbjct: 308 AIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD 364
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ + I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR
Sbjct: 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Query: 543 E 545
+
Sbjct: 425 K 425
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 375 bits (964), Expect = e-104
Identities = 188/242 (77%), Positives = 208/242 (85%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLD
Sbjct: 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIR
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQ
Sbjct: 701 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Query: 723 TL 728
TL
Sbjct: 761 TL 762
Score = 147 bits (371), Expect = 4e-35
Identities = 77/181 (42%), Positives = 113/181 (62%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D
Sbjct: 308 AIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD 364
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ + I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR
Sbjct: 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Query: 543 E 545
+
Sbjct: 425 K 425
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit) (Valosin-containing protein)
(VCP)
Length = 806
Score = 375 bits (964), Expect = e-104
Identities = 188/242 (77%), Positives = 208/242 (85%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLD
Sbjct: 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDEKSR+ ILKANLRKSP+AKDVD+ ++AK+T+GFSGADLTEICQRACK AIR
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE++I+ R++Q+ ++ DPVPEI R HFEEAM+FARRSV+DND+RKYEMFAQ
Sbjct: 701 ESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Query: 723 TL 728
TL
Sbjct: 761 TL 762
Score = 147 bits (371), Expect = 4e-35
Identities = 77/181 (42%), Positives = 113/181 (62%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D
Sbjct: 308 AIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD 364
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ + I +PD R++IL+ + + +A DVD+ +A THG GADL +C A QAIR
Sbjct: 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Query: 543 E 545
+
Sbjct: 425 K 425
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase (TER ATPase) (15S
Mg(2+)-ATPase p97 subunit)
Length = 805
Score = 374 bits (960), Expect = e-103
Identities = 189/242 (78%), Positives = 207/242 (85%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQAAPCVLFFDELD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIAK INQ+LTEMDGMS KKNVFIIGATNRPDIID AILRPGRLD
Sbjct: 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDEKSR+ ILKANLRKSP+AKDVDV+++AK+T+GFSGADLTEICQRACK AIR
Sbjct: 641 QLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIR 700
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE +I+ RD+Q+ ++ DPVPEI R HFEEAM+ ARRSV+DND+RKYEMFAQ
Sbjct: 701 ESIENEIRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQ 760
Query: 723 TL 728
TL
Sbjct: 761 TL 762
Score = 146 bits (369), Expect = 6e-35
Identities = 76/181 (41%), Positives = 113/181 (62%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DELD
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + +V ++ ATNRP+ ID A+ R GR D
Sbjct: 308 AIAPKREKTHGEVERRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD 364
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ + I +PD R++IL+ + + ++ DVD+ +A THG GADL +C A QAIR
Sbjct: 365 REVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Query: 543 E 545
+
Sbjct: 425 K 425
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48
homolog 2)
Length = 810
Score = 372 bits (954), Expect = e-103
Identities = 195/276 (70%), Positives = 217/276 (78%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRD+FDKAR AAPCVLFFDELD
Sbjct: 526 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELD 585
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIAK INQ+LTEMDGM+AKKNVFIIGATNRPDIID A+LRPGRLD
Sbjct: 586 SIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLD 645
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDE SR+QI KA+LRK+P++ D+D+N++AK T GFSGADLTEICQRACK AIR
Sbjct: 646 QLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLAIR 705
Query: 543 ECIEADI---KAARDQQSKGGEPMEDDI-DPVPEITRKHFEEAMKFARRSVTDNDVRKYE 710
E IE +I K +D+ ++G E MED++ DPVPEITR HFEEAMKFARRSVTDND+RKYE
Sbjct: 706 ESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKFARRSVTDNDIRKYE 765
Query: 711 MFAQTLXXXXXXXXXXXXPGANNEASNDFSRPSAGN 818
MFAQTL PG A +P GN
Sbjct: 766 MFAQTLQQSRGFGNNFKFPGEAPSA----GQPVGGN 797
Score = 145 bits (367), Expect = 1e-34
Identities = 77/184 (41%), Positives = 112/184 (60%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F + + +P +LF DE+D
Sbjct: 253 GTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEID 312
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + +V +I ATNRP+ ID A+ R GR D
Sbjct: 313 AIAPKREKAHGEVEKRI---VSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFD 369
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ I I +PD R++IL+ + + + +DVD+ +A HGF GADL +C A Q IR
Sbjct: 370 REIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIR 429
Query: 543 ECIE 554
E +E
Sbjct: 430 EKME 433
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48
homolog 1)
Length = 809
Score = 370 bits (949), Expect = e-102
Identities = 194/261 (74%), Positives = 213/261 (81%), Gaps = 5/261 (1%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRD+FDKAR AAPCVLFFDELD
Sbjct: 527 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELD 586
Query: 183 SIAKXXXXXXXXXXXXXXXX-INQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRL 359
SIAK INQ+LTEMDGM+AKKNVFIIGATNRPDIID A+LRPGRL
Sbjct: 587 SIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRL 646
Query: 360 DQLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAI 539
DQLIYIPLPDE SR QILKA+LRK+P++KD+D+ ++AK T GFSGADLTEICQRACK AI
Sbjct: 647 DQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAI 706
Query: 540 RECIEADI---KAARDQQSKGGEPMEDD-IDPVPEITRKHFEEAMKFARRSVTDNDVRKY 707
RE IE +I K +D+Q++G E MEDD +DPVPEITR HFEEAMKFARRSVTDND+RKY
Sbjct: 707 RESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKY 766
Query: 708 EMFAQTLXXXXXXXXXXXXPG 770
EMFAQTL PG
Sbjct: 767 EMFAQTLQQSRGFGNNFKFPG 787
Score = 147 bits (370), Expect = 5e-35
Identities = 77/184 (41%), Positives = 112/184 (60%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE + F I GPE+++ GESE+N+R F++ + P +LF DE+D
Sbjct: 254 GTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEID 313
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
+IA ++QLLT MDG+ + N+ +I ATNRP+ ID A+ R GR D
Sbjct: 314 AIAPKREKTNGEVERRI---VSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFD 370
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ I I +PD R++IL+ + + +A DVD+ +A HGF GADL +C A Q IR
Sbjct: 371 REIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIR 430
Query: 543 ECIE 554
E +E
Sbjct: 431 EKME 434
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E (AtCDC48e) (Transitional
endoplasmic reticulum ATPase E)
Length = 810
Score = 344 bits (882), Expect = 2e-94
Identities = 178/244 (72%), Positives = 200/244 (81%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVR+IFDKARQ+APCVLFFDELD
Sbjct: 524 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 583
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIA +NQLLTEMDGM+AKK VFIIGATNRPDIID+A+LRPGRLD
Sbjct: 584 SIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLD 643
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDE SR+ I KA LRKSP+AKDVDV +AK T GFSGAD+TEICQRACK AIR
Sbjct: 644 QLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIR 703
Query: 543 ECIEADIKAARDQQSKGGEPMEDDI--DPVPEITRKHFEEAMKFARRSVTDNDVRKYEMF 716
E IE DI+ R ++S+ E ME+D+ D V EI HFEE+MK+ARRSV+D D+RKY+ F
Sbjct: 704 ENIEKDIENER-RRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAF 762
Query: 717 AQTL 728
AQTL
Sbjct: 763 AQTL 766
Score = 154 bits (389), Expect = 3e-37
Identities = 79/181 (43%), Positives = 118/181 (65%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DE+D
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 310
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIA ++QLLT MDG+ ++ +V ++GATNRP+ ID A+ R GR D
Sbjct: 311 SIAPKREKTNGEVERRI---VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFD 367
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ I I +PDE R+++L+ + + +A+DVD+ ++K THG+ GADL +C A Q IR
Sbjct: 368 REIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIR 427
Query: 543 E 545
E
Sbjct: 428 E 428
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog
Length = 805
Score = 343 bits (881), Expect = 3e-94
Identities = 174/242 (71%), Positives = 199/242 (82%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVR+IFDKARQ+APCVLFFDELD
Sbjct: 525 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 584
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIA +NQLLTEMDGM+AKK VFIIGATNRPDIID A+LRPGRLD
Sbjct: 585 SIATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 644
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDE SR QI KA LRKSP++KD+D+ +AK T GFSGAD+TEICQRACK AIR
Sbjct: 645 QLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIR 704
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE DI+ + +Q + + M++D+D VPEI HFEE+MK+ARRSV+D D+RKY+ FAQ
Sbjct: 705 ENIEKDIEREKRRQ-ENPDSMDEDVDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQ 763
Query: 723 TL 728
TL
Sbjct: 764 TL 765
Score = 154 bits (388), Expect = 4e-37
Identities = 84/220 (38%), Positives = 134/220 (60%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DE+D
Sbjct: 252 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 311
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIA ++QLLT MDG+ ++ +V ++GATNRP+ ID A+ R GR D
Sbjct: 312 SIAPKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFD 368
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ I I +PDE R+++L + + +A++VD+ ++K THG+ GADL +C A Q IR
Sbjct: 369 REIDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISKDTHGYVGADLAALCTEAALQCIR 428
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAM 662
E + D+ D + ++ ++ +T +HF+ A+
Sbjct: 429 E--KMDVLDLED------DTIDAEVLNSMAVTNEHFQTAL 460
>sp|Q9SCN8|CD48D_ARATH Putative cell division control protein 48 homolog D (AtCDC48d)
(Transitional endoplasmic reticulum ATPase D)
Length = 815
Score = 342 bits (877), Expect = 8e-94
Identities = 174/242 (71%), Positives = 199/242 (82%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR+IFDKARQ+APCVLFFDELD
Sbjct: 525 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 584
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIA +NQLLTEMDGM+AKK VFIIGATNRPDIID A+LRPGRLD
Sbjct: 585 SIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLD 644
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
QLIYIPLPDE+SR QI K+ LRKSP+AKDVD+ +AK T GFSGAD+TEICQR+CK AIR
Sbjct: 645 QLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIR 704
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAMKFARRSVTDNDVRKYEMFAQ 722
E IE DI+ R ++++ E ME+D + + EI HFEE+MK+ARRSV+D D+RKY+ FAQ
Sbjct: 705 ENIEKDIEKER-KRAESPEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQ 763
Query: 723 TL 728
TL
Sbjct: 764 TL 765
Score = 154 bits (390), Expect = 2e-37
Identities = 86/220 (39%), Positives = 134/220 (60%)
Frame = +3
Query: 3 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKARQAAPCVLFFDELD 182
G GKTL+A+A+ANE A F I GPE+++ GESE+N+R F++A + AP ++F DE+D
Sbjct: 252 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 311
Query: 183 SIAKXXXXXXXXXXXXXXXXINQLLTEMDGMSAKKNVFIIGATNRPDIIDAAILRPGRLD 362
SIA ++QLLT MDG+ ++ +V ++GATNRP+ ID A+ R GR D
Sbjct: 312 SIAPKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFD 368
Query: 363 QLIYIPLPDEKSRIQILKANLRKSPIAKDVDVNYMAKVTHGFSGADLTEICQRACKQAIR 542
+ I I +PDE R+++L+ + + +A+DVD+ ++K THG+ GADL +C A Q IR
Sbjct: 369 REIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIR 428
Query: 543 ECIEADIKAARDQQSKGGEPMEDDIDPVPEITRKHFEEAM 662
E + D+ D E ++ +I ++ HF+ A+
Sbjct: 429 E--KMDVIDLDD------EEIDAEILNSMAVSNDHFQTAL 460
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,366,037
Number of Sequences: 369166
Number of extensions: 1719441
Number of successful extensions: 5470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5131
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)