Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_M07
(413 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q81WE9|PYRB_BACAN Aspartate carbamoyltransferase (Aspart... 30 1.9
sp|Q9UUG9|TSC2_SCHPO Tuberous sclerosis 2 protein homolog 30 1.9
sp|Q732I0|PYRB_BACC1 Aspartate carbamoyltransferase (Aspart... 30 1.9
sp|Q819S0|PYRB_BACCR Aspartate carbamoyltransferase (Aspart... 30 1.9
sp|Q8X1T3|PYC_PICAN Pyruvate carboxylase (Pyruvic carboxyla... 30 1.9
sp|Q818W0|ARGJ_BACCR Arginine biosynthesis bifunctional pro... 30 2.5
sp|P16226|IPSG_MELME Double-headed protease inhibitor, subm... 29 3.3
sp|P08479|IPSG_VULVU Double-headed protease inhibitor, subm... 29 4.3
sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (... 29 4.3
sp|Q6HE29|ARGJ_BACHK Arginine biosynthesis bifunctional pro... 29 4.3
>sp|Q81WE9|PYRB_BACAN Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
sp|Q636D7|PYRB_BACCZ Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
sp|Q6HES5|PYRB_BACHK Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
Length = 304
Score = 30.0 bits (66), Expect = 1.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 194 LNCGADVNKMPKDCYLEMITVNEAFSK-EIDKLDSTCDAEYFKTLKNNANARKKL 355
LN G P C L+++T+ + F + E K+ D + + ++NA A KL
Sbjct: 118 LNAGDGCGNHPTQCLLDLLTIKQEFGRFEGLKIAIVGDVRHSRVARSNAEALTKL 172
>sp|Q9UUG9|TSC2_SCHPO Tuberous sclerosis 2 protein homolog
Length = 1339
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 161 QDYAAAFKSIELNCG-ADVNKMPKDCYLEMITVNEAFSKEIDKLDSTCDAEYFKTLKNNA 337
+D A FK +E C AD N P C + V E+FSKE D D Y +
Sbjct: 475 EDRALLFKLVEDACSVADENSAPILCSKFLFPVIESFSKESD--DCVVSPVYNMLFFLSV 532
Query: 338 NARKKLLADC 367
N + L DC
Sbjct: 533 NFQNPGLKDC 542
>sp|Q732I0|PYRB_BACC1 Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
Length = 304
Score = 30.0 bits (66), Expect = 1.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 194 LNCGADVNKMPKDCYLEMITVNEAFSK-EIDKLDSTCDAEYFKTLKNNANARKKL 355
LN G P C L+++T+ + F + E K+ D + + ++NA A KL
Sbjct: 118 LNAGDGCGNHPTQCLLDLLTIKQEFGRFEGLKIAIVGDVRHSRVARSNAEALTKL 172
>sp|Q819S0|PYRB_BACCR Aspartate carbamoyltransferase (Aspartate transcarbamylase)
(ATCase)
Length = 301
Score = 30.0 bits (66), Expect = 1.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 194 LNCGADVNKMPKDCYLEMITVNEAFSK-EIDKLDSTCDAEYFKTLKNNANARKKL 355
LN G P C L+++T+ + F + E K+ D + + ++NA A KL
Sbjct: 115 LNAGDGCGNHPTQCLLDLLTIKQEFGRFEGLKIAIVGDVRHSRVARSNAEALTKL 169
>sp|Q8X1T3|PYC_PICAN Pyruvate carboxylase (Pyruvic carboxylase) (PCB)
Length = 1175
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 77 ELNKLNADYNKGGGKVDTECDNAYKKINQDYAAAFKSIELNCGADVNKMPKDCYLEMITV 256
+L K+ + G TECD A + +FK I+ G D++ +P +L +
Sbjct: 981 DLKKIKEELQSRFGNSITECDVASYNMYPKVFESFKKIQEKYG-DLSVLPTRFFLAPPKL 1039
Query: 257 NEAFSKEIDK 286
NE S EI++
Sbjct: 1040 NEEISVEIEQ 1049
>sp|Q818W0|ARGJ_BACCR Arginine biosynthesis bifunctional protein argJ [Includes:
Glutamate N-acetyltransferase (Ornithine
acetyltransferase) (Ornithine transacetylase) (OATase);
Amino-acid acetyltransferase (N-acetylglutamate
synthase) (AGS)] [Contains: Arginine biosynthesis
bifunctional protein argJ alpha chain; Arginine
biosynthesis bifunctional protein argJ beta chain]
Length = 408
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 74 KELNKLNADYNKGGGKVDTECDNAYKKINQDYAAAFKSIELN-CGADVNKMPK 229
+ +N + D+ G + C++ KKI QD A K IE+N GA N+ K
Sbjct: 249 RPINMEHTDWETFVGALQKVCEDLAKKIAQDGEGATKLIEVNVLGAQTNEEAK 301
>sp|P16226|IPSG_MELME Double-headed protease inhibitor, submandibular gland
Length = 122
Score = 29.3 bits (64), Expect = 3.3
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 110 GGGKVDTECDNAYKKINQDYAAAFKSIELNCGADVNKMPKDCYLEMITVNEAFSKEIDKL 289
GG KV+ NA A + ++ CG D +C M+T N+ FS I +
Sbjct: 10 GGRKVNCSKYNA----KGSQFACSRHLDPVCGTDHRTYSNECMFCMLTQNKRFSVRILQ- 64
Query: 290 DSTCDAE 310
D+ CD E
Sbjct: 65 DNNCDIE 71
>sp|P08479|IPSG_VULVU Double-headed protease inhibitor, submandibular gland
Length = 115
Score = 28.9 bits (63), Expect = 4.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 122 VDTECDNAYKKINQDYAAAFKSIELNCGADVNKMPKDCYLEMITVNEAFSKEIDKL-DST 298
+ E D + K A + ++ CG D N +C +T+N+ F E+ KL D+
Sbjct: 6 IGREVDCSSYKGKGSQIACPRHLQPICGTDHNTYSNECMFCALTLNKEF--EVRKLQDTA 63
Query: 299 CDAE 310
CD E
Sbjct: 64 CDIE 67
>sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (Kinesin-like protein osm-3)
Length = 699
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 44 QKRALNAECQKELNKLNADYNKGGGKVDT-ECDNAYKKINQ 163
+++ AE QK+L L ADY + +D + A KKI Q
Sbjct: 397 REQTSKAELQKDLESLRADYERANANLDNLNPEEAAKKIQQ 437
>sp|Q6HE29|ARGJ_BACHK Arginine biosynthesis bifunctional protein argJ [Includes:
Glutamate N-acetyltransferase (Ornithine
acetyltransferase) (Ornithine transacetylase) (OATase);
Amino-acid acetyltransferase (N-acetylglutamate
synthase) (AGS)] [Contains: Arginine biosynthesis
bifunctional protein argJ alpha chain; Arginine
biosynthesis bifunctional protein argJ beta chain]
Length = 408
Score = 28.9 bits (63), Expect = 4.3
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 74 KELNKLNADYNKGGGKVDTECDNAYKKINQDYAAAFKSIELN-CGADVNKMPK 229
K +N +AD+ + C++ KKI QD A K IE+N GA N+ K
Sbjct: 249 KPINMEHADWETFVFALQKVCEDLAKKIAQDGEGATKLIEVNVLGAQTNEEAK 301
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,740,718
Number of Sequences: 369166
Number of extensions: 639408
Number of successful extensions: 1632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)