Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_L24
(233 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8S4P6|EZ1_MAIZE Polycomb protein EZ1 (Enhancer of zeste... 29 3.0
sp|P10239|UL55_HHV11 Protein UL55 28 5.1
sp|P36296|UL55_HHV1E Protein UL55 28 5.1
sp|P66734|RRF_MYCTU Ribosome recycling factor (Ribosome rel... 28 5.1
sp|P61307|RRF_MYCPA Ribosome recycling factor (Ribosome rel... 28 5.1
sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1 28 8.7
>sp|Q8S4P6|EZ1_MAIZE Polycomb protein EZ1 (Enhancer of zeste protein 1)
Length = 931
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 19 ANR*CRYESARTCWQGCRYSEGEVGNFASCGDKDEADLRRRITRKREFILIG 174
A+R C + R CW GC +G +G GD E + + ++++ +L+G
Sbjct: 734 ADRECDPDVCRNCWVGC--GDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLG 783
>sp|P10239|UL55_HHV11 Protein UL55
Length = 186
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 31 CRYESARTCWQGCRYSEGEVGNFASCGDKDEADLRRRITRK 153
CRY ++TCW G + + + +S G A RR+ K
Sbjct: 143 CRYPFSKTCWMGASAALQHLRSISSSGMAARAAEHRRVKIK 183
>sp|P36296|UL55_HHV1E Protein UL55
Length = 186
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 31 CRYESARTCWQGCRYSEGEVGNFASCGDKDEADLRRRITRK 153
CRY ++TCW G + + + +S G A RR+ K
Sbjct: 143 CRYPFSKTCWMGASAALQHLRSISSSGMAARAAEHRRVKIK 183
>sp|P66734|RRF_MYCTU Ribosome recycling factor (Ribosome releasing factor) (RRF)
sp|P66735|RRF_MYCBO Ribosome recycling factor (Ribosome releasing factor) (RRF)
Length = 185
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 23 IDDAVMKAREHVGKAVAIAKEKLATL 100
ID+A+ A E + KAVA+A++ L+T+
Sbjct: 2 IDEALFDAEEKMEKAVAVARDDLSTI 27
>sp|P61307|RRF_MYCPA Ribosome recycling factor (Ribosome releasing factor) (RRF)
Length = 185
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 23 IDDAVMKAREHVGKAVAIAKEKLATL 100
ID+A+ A E + KAVA+A++ L+T+
Sbjct: 2 IDEALFDAEEKMEKAVAVARDDLSTI 27
>sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1
Length = 412
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 150 SRDS-PPQICFIFVPTTGKVANFSF 79
S DS PP++ FI TGKVA+FS+
Sbjct: 351 SSDSVPPEVIFIHAGHTGKVADFSW 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,278,088
Number of Sequences: 369166
Number of extensions: 382992
Number of successful extensions: 1197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)