Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_L20
(136 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P81439|EQST_ACTEQ Equistatin 31 1.0
sp|P01267|THYG_BOVIN Thyroglobulin precursor 29 2.9
sp|O08710|THYG_MOUSE Thyroglobulin precursor 29 2.9
>sp|P81439|EQST_ACTEQ Equistatin
Length = 199
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 2 YEKAQCLGSV--CFCADENGKQIGSTTV 79
+E+ QC GS C+C DE+GK+I T +
Sbjct: 30 FEEKQCWGSTGYCWCVDEDGKEILGTKI 57
>sp|P01267|THYG_BOVIN Thyroglobulin precursor
Length = 2769
Score = 29.3 bits (64), Expect = 2.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 2 YEKAQCLGSVCFCADENGKQIGSTTV 79
YE+ QC C+C D G+++ + V
Sbjct: 625 YEEVQCFAGDCWCVDAQGRELAGSRV 650
>sp|O08710|THYG_MOUSE Thyroglobulin precursor
Length = 2766
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 2 YEKAQCLGSVCFCADENGKQIGSTTV 79
YE QC C+C D GK++ + V
Sbjct: 626 YEDIQCYAGECWCVDSRGKELDGSRV 651
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,345,133
Number of Sequences: 369166
Number of extensions: 140443
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)