Planarian EST Database

Dr_sW_027_L06-1

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_027_L06-1
         (609 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34758|SCD5_YEAST  Protein SCD5 (Protein FTB1)                  36   0.067

>sp|P34758|SCD5_YEAST Protein SCD5 (Protein FTB1)
          Length = 872

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 29/101 (28%), Positives = 49/101 (48%)
 Frame = +1

Query: 142 IVSPPNIITTK*YH*QIVSPSNSITTK*YHHRILSPPNSITTK*YHHQIVSPPNSITTKY 321
           IVS P +  T  +      P N++      H +LSP N+I       Q++SP N+ T   
Sbjct: 580 IVSMPKVEITGAF-----PPQNTLPQHQQSH-LLSPQNTIPQH-QRSQLISPQNTFTQ-- 630

Query: 322 YHQHTLSPRYSITTK*YHHQLVSPRNSITTKEYHNQKVSPP 444
            +Q  LSP+++ +       ++SP+N+ T  +   Q + PP
Sbjct: 631 -NQPILSPQHTYSNN--QATMISPQNTYTNNQQQPQHLPPP 668

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,731,514
Number of Sequences: 369166
Number of extensions: 1768821
Number of successful extensions: 2683
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2639
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)