Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_L04
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O94760|DDAH1_HUMAN NG,NG-dimethylarginine dimethylaminoh... 104 3e-22
sp|P56965|DDAH1_BOVIN NG,NG-dimethylarginine dimethylaminoh... 102 2e-21
sp|O08557|DDAH1_RAT NG,NG-dimethylarginine dimethylaminohyd... 99 1e-20
sp|Q9CWS0|DDAH1_MOUSE NG,NG-dimethylarginine dimethylaminoh... 99 1e-20
sp|O95865|DDAH2_HUMAN NG,NG-dimethylarginine dimethylaminoh... 78 3e-14
sp|Q99LD8|DDH2_MOUSE NG,NG-dimethylarginine dimethylaminohy... 76 1e-13
sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor 33 0.98
sp|P20530|YVAU_VACCC Hypothetical 8.8 kDa protein 32 1.7
sp|P08849|HBAD_ACCGE Hemoglobin alpha-D subunit (Hemoglobin... 32 2.9
sp|P12255|FHAB_BORPE Filamentous hemagglutinin 32 2.9
>sp|O94760|DDAH1_HUMAN NG,NG-dimethylarginine dimethylaminohydrolase 1 (Dimethylargininase
1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI)
(DDAH-1)
Length = 285
Score = 104 bits (260), Expect = 3e-22
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIG 181
VLFTG+E VGLS TN+ GA+ +A F +Y +TV V +LK +MAG N+ AIG
Sbjct: 131 VLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGL-HLKSFCSMAGPNLIAIG 189
Query: 182 QSESARKMLTEIMSVVTYNYKQISLPEDIAAQTFYIN-----HILIHLCDEMIPNSFGVF 346
SESA+K L + + + Y ++++P+DIAA Y+N H+L+H E P S V+
Sbjct: 190 SSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVY 249
Query: 347 ENKIDFNRLPIDLSELYKAGITLPKMALLVGK 442
E D +P+ +SEL K L ++L+ K
Sbjct: 250 EKLKDHMLIPVSMSELEKVDGLLTCCSVLINK 281
>sp|P56965|DDAH1_BOVIN NG,NG-dimethylarginine dimethylaminohydrolase 1 (Dimethylargininase
1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI)
(DDAH-1)
Length = 284
Score = 102 bits (253), Expect = 2e-21
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 5/152 (3%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIG 181
VLFTG+E VGLS TN+ GA+ +A F +Y +TV V+ +LK +MAG N+ AIG
Sbjct: 130 VLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVVDAL-HLKSFCSMAGPNLIAIG 188
Query: 182 QSESARKMLTEIMSVVTYNYKQISLPEDIAAQTFYIN-----HILIHLCDEMIPNSFGVF 346
SESA+K L + + + Y ++++P+D AA Y+N H+L+H E P S V+
Sbjct: 189 SSESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRTPEEYPESAKVY 248
Query: 347 ENKIDFNRLPIDLSELYKAGITLPKMALLVGK 442
E D +P+ SEL K L ++L+ K
Sbjct: 249 EKLKDHMLIPVSNSELEKVDGLLTCSSVLINK 280
>sp|O08557|DDAH1_RAT NG,NG-dimethylarginine dimethylaminohydrolase 1 (Dimethylargininase
1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI)
(DDAH-1)
Length = 285
Score = 99.4 bits (246), Expect = 1e-20
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIG 181
VLFTG+E VGLS TN+ GA+ +A F +Y +TV V +LK +MAG N+ AIG
Sbjct: 131 VLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADSL-HLKSFCSMAGPNLIAIG 189
Query: 182 QSESARKMLTEIMSVVTYNYKQISLPEDIAAQTFYIN-----HILIHLCDEMIPNSFGVF 346
SESA+K L + + + Y ++++P+D+AA Y+N H+L+H E P S V+
Sbjct: 190 SSESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVY 249
Query: 347 ENKIDFNRLPIDLSELYKAGITLPKMALLVGK 442
E D +P+ SE+ K L ++ + K
Sbjct: 250 EKLKDHLLIPVSNSEMEKVDGLLTCCSVFINK 281
>sp|Q9CWS0|DDAH1_MOUSE NG,NG-dimethylarginine dimethylaminohydrolase 1 (Dimethylargininase
1) (Dimethylarginine dimethylaminohydrolase 1) (DDAHI)
(DDAH-1)
Length = 285
Score = 99.4 bits (246), Expect = 1e-20
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIG 181
VLFTG+E VGLS TN+ GA+ +A F +Y +TV V +LK +MAG N+ AIG
Sbjct: 131 VLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADSL-HLKSFCSMAGPNLIAIG 189
Query: 182 QSESARKMLTEIMSVVTYNYKQISLPEDIAAQTFYIN-----HILIHLCDEMIPNSFGVF 346
SESA+K L + + + Y ++++P+D+AA Y+N H+L+H E P S V+
Sbjct: 190 SSESAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVY 249
Query: 347 ENKIDFNRLPIDLSELYKAGITLPKMALLVGK 442
E D +P+ SE+ K L ++ + K
Sbjct: 250 EKLKDHLLIPVSNSEMEKVDGLLTCCSVFINK 281
>sp|O95865|DDAH2_HUMAN NG,NG-dimethylarginine dimethylaminohydrolase 2 (Dimethylargininase
2) (Dimethylarginine dimethylaminohydrolase 2) (DDAHII)
(S-phase protein) (G6a protein)
Length = 285
Score = 77.8 bits (190), Expect = 3e-14
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIG 181
VLFTG+E VGLS TN GA+ VA F ++ +TV V P +L+ M G G
Sbjct: 129 VLFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPVSGP-SHLRGLCGMGGPRTVVAG 187
Query: 182 QSESARKMLTEIMSVVTYNYKQISLPEDIAAQTFYIN-------HILIHLCDEMIPNSFG 340
S++A+K + + + + Y ++LP+D AA ++ L+H +PNS
Sbjct: 188 SSDAAQKAVRAMAVLTDHPYASLTLPDDAAADCLFLRPGLPGVPPFLLHRGGGDLPNSQE 247
Query: 341 VFENKIDFNRLPIDLSELYKAGITLPKMALLV 436
+ D +P+ SEL KAG L + L++
Sbjct: 248 ALQKLSDVTLVPVSCSELEKAGAGLSSLCLVL 279
>sp|Q99LD8|DDH2_MOUSE NG,NG-dimethylarginine dimethylaminohydrolase 2 (Dimethylargininase
2) (Dimethylarginine dimethylaminohydrolase 2) (DDAHII)
Length = 285
Score = 75.9 bits (185), Expect = 1e-13
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIG 181
VLFTG+E VGLS TN GA+ VA F ++ +TV V +L+ M G G
Sbjct: 129 VLFTGREFFVGLSKWTNHRGAEIVADTFRDFAVSTVPV-SGSSHLRGLCGMGGPRTVVAG 187
Query: 182 QSESARKMLTEIMSVVTYNYKQISLPEDIAAQTFYI-------NHILIHLCDEMIPNSFG 340
SE+A+K + + ++ + Y ++LP+D A+ ++ L+H +PNS
Sbjct: 188 SSEAAQKAVRAMAALTDHPYASLTLPDDAASDCLFLRPGLPGATPFLLHRGGGDLPNSQE 247
Query: 341 VFENKIDFNRLPIDLSELYKAGITLPKMALLV 436
+ D +P+ SEL KAG L + L++
Sbjct: 248 ALQKLSDVTLVPVSCSELEKAGAGLSSLCLVL 279
>sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor
Length = 3137
Score = 33.1 bits (74), Expect = 0.98
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2
Query: 2 VLFTGKEIIVGLSAHTNENGAQAVARAFPEYPT--TTVRVLPPFRNLKEGITMAGVNVFA 175
VL TG + LS H E G + P+ T R PF + + AGV FA
Sbjct: 721 VLNTGSALNFVLSNHFTEAGGSRINEQVPQVLVLVTAGRSAVPFLQVSNDLARAGVLTFA 780
Query: 176 IGQSESARKMLTEIMSVVTYNYKQISLPEDIAAQT 280
+G + + L +I +N K + +D + T
Sbjct: 781 VGVRNADKAELEQI----AFNPKMVYFMDDFSDLT 811
>sp|P20530|YVAU_VACCC Hypothetical 8.8 kDa protein
Length = 72
Score = 32.3 bits (72), Expect = 1.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 142 FF*ITEWWQNTHCCGGVFRKCTSYCLSPI 56
FF I+ W+++ CCG F +C +YC++ I
Sbjct: 3 FFFISNWFRSLVCCG--FSRCCTYCINAI 29
>sp|P08849|HBAD_ACCGE Hemoglobin alpha-D subunit (Hemoglobin alpha-D chain)
(Alpha-D-globin)
Length = 141
Score = 31.6 bits (70), Expect = 2.9
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Frame = +2
Query: 35 LSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEG---ITMAGVNVF-----AIGQSE 190
+ H + GA+A+ R F YPTT + P +L G + G V A+ +
Sbjct: 17 VQGHQEDFGAEALQRMFITYPTT--KTYFPHFDLSPGSDQVRSHGKKVVNALGNAVKSMD 74
Query: 191 SARKMLTEIMSVVTYNYKQISLPEDIAAQTFYINHILIHLCDEMIPNSFGVFE 349
+ + L+E+ ++ YN + + + +Q F + + +HL E P F+
Sbjct: 75 NLSQALSELSNLHAYNLRVDPVNFKLLSQCFQV-VLAVHLGKEYTPEVHSAFD 126
>sp|P12255|FHAB_BORPE Filamentous hemagglutinin
Length = 3590
Score = 31.6 bits (70), Expect = 2.9
Identities = 31/137 (22%), Positives = 51/137 (37%)
Frame = +2
Query: 29 VGLSAHTNENGAQAVARAFPEYPTTTVRVLPPFRNLKEGITMAGVNVFAIGQSESARKML 208
VG+ T + Q V E P TVRV PP L + + + +R
Sbjct: 2324 VGVEPVTGDQVDQPVVAVGLEQPVATVRVAPPAVALPRPLFETRIKFIDQSKFYGSR--- 2380
Query: 209 TEIMSVVTYNYKQISLPEDIAAQTFYINHILIHLCDEMIPNSFGVFENKIDFNRLPIDLS 388
Y ++QI D AA+ N+ L E + + G +E+++ + +
Sbjct: 2381 --------YFFEQIGYKPDRAARVAGDNYFDTTLVREQVRRALGGYESRLPVRGVALVAK 2432
Query: 389 ELYKAGITLPKMALLVG 439
+ AG + L VG
Sbjct: 2433 LMDSAGTVGKALGLKVG 2449
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,491,230
Number of Sequences: 369166
Number of extensions: 1770974
Number of successful extensions: 4401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4390
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)