Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_L01-1
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7Z602|GP141_HUMAN Probable G-protein coupled receptor 1... 29 2.9
sp|Q04503|DP87_DICDI Prespore protein DP87 precursor 28 8.5
>sp|Q7Z602|GP141_HUMAN Probable G-protein coupled receptor 141 (G-protein coupled receptor
PGR13)
Length = 305
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -2
Query: 239 YKKPLALYT*MMALNYC*LVFLLYIEYSPVQFQV*CLLLHLQSISHRKLLHTVYF 75
+ K LA YT + +NY ++F++ + + FQV ++L +Q + H L H ++
Sbjct: 169 FHKELA-YTYVKIINYMIVIFVIAVAVILLVFQVFIIMLMVQKLRHSLLSHQEFW 222
>sp|Q04503|DP87_DICDI Prespore protein DP87 precursor
Length = 555
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 1 IIYSFHSIFLFSYYLSSVWNWIVGRK*TVCNNLRCEILCRCNK 129
I+Y +FL + YLS + W GR C + R E C+ ++
Sbjct: 3 ILYLASLLFLITLYLSPTFGWGGGRD---CESHRSEYTCKSDR 42
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,937,850
Number of Sequences: 369166
Number of extensions: 607138
Number of successful extensions: 1455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)