Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_K19
(132 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14314|GLU2B_HUMAN Glucosidase II beta subunit precursor... 30 1.3
sp|Q28034|GLU2B_BOVIN Glucosidase II beta subunit precursor... 30 1.3
sp|O08795|GLU2B_MOUSE Glucosidase II beta subunit precursor... 30 2.2
sp|Q59258|CISY_BARTA Citrate synthase 28 5.0
sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) gl... 28 8.5
sp|P14421|PA23_AGKHP Phospholipase A2, neutral (Agkistrotox... 28 8.5
>sp|P14314|GLU2B_HUMAN Glucosidase II beta subunit precursor (Protein kinase C substrate,
60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein)
Length = 527
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 35 DVCGNNDQCNVGLICEEVCKE 97
D C D+ N G+ICE CKE
Sbjct: 98 DCCDGTDEYNSGVICENTCKE 118
>sp|Q28034|GLU2B_BOVIN Glucosidase II beta subunit precursor (Protein kinase C substrate,
60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein)
(Vacuolar system associated protein 60) (VASAP-60)
Length = 533
Score = 30.4 bits (67), Expect = 1.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 35 DVCGNNDQCNVGLICEEVCKE 97
D C D+ N G++CE CKE
Sbjct: 97 DCCDGTDEYNSGIVCENTCKE 117
>sp|O08795|GLU2B_MOUSE Glucosidase II beta subunit precursor (Protein kinase C substrate,
60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein)
Length = 521
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 8 IFSSKLEE--FDVCGNNDQCNVGLICEEVCKEDNNAPK 115
I SS++ + D C D+ N G +CE C+E K
Sbjct: 87 ILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEK 124
>sp|Q59258|CISY_BARTA Citrate synthase
Length = 322
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 119 NILEHCYLLY--KLPHKLDQHYIDHCYHKHQIL 27
+ LE CYLL +LP K ++H D C +H ++
Sbjct: 25 DFLESCYLLLYGELPTKQEKHDFDRCIMQHTMV 57
>sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
(Polyglycerol phosphate polymerase) (CGPTase) (Major
teichoic acid biosynthesis protein F)
Length = 746
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 126 LLKHFGALLSSLQTSSQIRPTLH*SLLPQTSNSSNFELKMQ 4
LLK A ++S++ + + T +LP T++ NF +K++
Sbjct: 126 LLKRLSAEVNSIERAFHVDQTTELLILPYTTDKGNFSIKVK 166
>sp|P14421|PA23_AGKHP Phospholipase A2, neutral (Agkistrotoxin) (ATX)
(Phosphatidylcholine 2-acylhydrolase)
Length = 122
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 IFSSKLEE-FDVCGNNDQCNVGLICEEVCKEDNNAPKCFKRH 130
I+S L+E + CG C E++C+ D A +CF+R+
Sbjct: 63 IYSYSLKEGYITCGKGTNCE-----EQICECDRVAAECFRRN 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,460,077
Number of Sequences: 369166
Number of extensions: 163017
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 68,354,980
effective HSP length: 17
effective length of database: 65,214,485
effective search space used: 1695576610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)